Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 AF228730.7-201ENST00000641842 219 ntBASIC11.91□□□□□ -0.5
UPK3BQ9BT76 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC11.91□□□□□ -0.5
UPK3BQ9BT76 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 AL591424.1-201ENST00000442569 1213 ntBASIC11.9□□□□□ -0.5
UPK3BQ9BT76 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 SLC25A1P1-201ENST00000528351 927 ntBASIC11.9□□□□□ -0.5
UPK3BQ9BT76 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 RPL18-209ENST00000550645 463 ntTSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 RPL18-214ENST00000552588 559 ntTSL 3 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 AL139327.4-201ENST00000612362 153 ntBASIC11.9□□□□□ -0.5
UPK3BQ9BT76 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 AC004817.3-201ENST00000602957 2129 ntBASIC11.9□□□□□ -0.5
UPK3BQ9BT76 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
UPK3BQ9BT76 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC11.9□□□□□ -0.51
UPK3BQ9BT76 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
UPK3BQ9BT76 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
UPK3BQ9BT76 REXO1L11P-201ENST00000620964 1927 ntBASIC11.9□□□□□ -0.51
UPK3BQ9BT76 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC11.9□□□□□ -0.51
UPK3BQ9BT76 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC11.9□□□□□ -0.51
UPK3BQ9BT76 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 GPR89P-201ENST00000407924 1495 ntBASIC11.89□□□□□ -0.51
UPK3BQ9BT76 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 AC006116.8-202ENST00000587620 1550 ntBASIC11.89□□□□□ -0.51
UPK3BQ9BT76 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
UPK3BQ9BT76 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms