Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
NKX3-1Q99801 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
NKX3-1Q99801 PCDHB17P-201ENST00000539533 2393 ntBASIC14.91□□□□□ -0.02
NKX3-1Q99801 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
NKX3-1Q99801 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC14.91□□□□□ -0.02
NKX3-1Q99801 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 AL031133.1-201ENST00000406807 723 ntBASIC14.91□□□□□ -0.02
NKX3-1Q99801 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 AL845331.1-201ENST00000424978 1190 ntBASIC14.91□□□□□ -0.02
NKX3-1Q99801 UPK3BP1-201ENST00000428678 509 ntBASIC14.91□□□□□ -0.02
NKX3-1Q99801 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.91□□□□□ -0.02
NKX3-1Q99801 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.91□□□□□ -0.02
NKX3-1Q99801 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 AL162727.3-201ENST00000635661 2787 ntBASIC14.91□□□□□ -0.02
NKX3-1Q99801 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
NKX3-1Q99801 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.91□□□□□ -0.02
NKX3-1Q99801 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 KRT8P10-201ENST00000450021 1447 ntBASIC14.91□□□□□ -0.02
NKX3-1Q99801 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
NKX3-1Q99801 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
NKX3-1Q99801 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 STX3-203ENST00000529177 1571 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 IGHV3-52-201ENST00000519770 353 ntBASIC14.9□□□□□ -0.02
NKX3-1Q99801 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AC005336.2-201ENST00000593183 939 ntBASIC14.9□□□□□ -0.02
NKX3-1Q99801 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 AC091076.1-201ENST00000610741 619 ntBASIC14.9□□□□□ -0.02
NKX3-1Q99801 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.9□□□□□ -0.02
NKX3-1Q99801 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
NKX3-1Q99801 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
NKX3-1Q99801 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms