Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SAE1-210ENST00000600706 744 ntTSL 513.5□□□□□ -0.251e-8■□□□□ 8.5
UPF1Q92900 RNF14-213ENST00000512565 670 ntTSL 313.38□□□□□ -0.272e-6■□□□□ 8.5
UPF1Q92900 RNF14-203ENST00000394514 2905 ntTSL 2 BASIC13.01□□□□□ -0.332e-6■□□□□ 8.5
UPF1Q92900 C1orf43-209ENST00000493814 441 ntTSL 213□□□□□ -0.332e-6■□□□□ 8.5
UPF1Q92900 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC12.57□□□□□ -0.42e-6■□□□□ 8.5
UPF1Q92900 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC12.55□□□□□ -0.42e-6■□□□□ 8.5
UPF1Q92900 FMNL3-203ENST00000549137 2650 ntTSL 512.4□□□□□ -0.422e-6■□□□□ 8.5
UPF1Q92900 NCAPG2-201ENST00000356309 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.431e-8■□□□□ 8.5
UPF1Q92900 FLOT2-205ENST00000580313 429 ntTSL 312.37□□□□□ -0.431e-8■□□□□ 8.5
UPF1Q92900 NCAPG2-203ENST00000409423 3957 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.521e-8■□□□□ 8.5
UPF1Q92900 PDE4DIP-237ENST00000585156 8439 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.592e-6■□□□□ 8.5
UPF1Q92900 SKP2-202ENST00000274255 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.642e-6■□□□□ 8.5
UPF1Q92900 SCMH1-216ENST00000489421 687 ntTSL 310.86□□□□□ -0.672e-7■□□□□ 8.5
UPF1Q92900 PDE4DIP-219ENST00000524974 8305 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.692e-6■□□□□ 8.5
UPF1Q92900 PTP4A2-207ENST00000494444 678 ntTSL 510.61□□□□□ -0.717e-10■□□□□ 8.5
UPF1Q92900 SKP2-203ENST00000504386 574 ntTSL 510.61□□□□□ -0.712e-6■□□□□ 8.5
UPF1Q92900 PTP4A2-202ENST00000468531 830 ntTSL 310.47□□□□□ -0.737e-10■□□□□ 8.5
UPF1Q92900 RNF14-205ENST00000394520 4235 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.742e-6■□□□□ 8.5
UPF1Q92900 FMNL3-201ENST00000335154 12634 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.792e-6■□□□□ 8.5
UPF1Q92900 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC9.57□□□□□ -0.887e-10■□□□□ 8.5
UPF1Q92900 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC9.57□□□□□ -0.887e-10■□□□□ 8.5
UPF1Q92900 NCAPG2-205ENST00000441982 2926 ntTSL 29.53□□□□□ -0.881e-8■□□□□ 8.5
UPF1Q92900 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.952e-6■□□□□ 8.5
UPF1Q92900 RNF14-216ENST00000515613 753 ntTSL 38.93□□□□□ -0.982e-6■□□□□ 8.5
UPF1Q92900 PDE4DIP-210ENST00000467859 1396 ntTSL 58.62□□□□□ -1.032e-6■□□□□ 8.5
UPF1Q92900 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC8.56□□□□□ -1.042e-6■□□□□ 8.5
UPF1Q92900 NCAPG2-204ENST00000432615 4134 ntTSL 58.42□□□□□ -1.061e-8■□□□□ 8.5
UPF1Q92900 SCMH1-214ENST00000482530 574 ntTSL 58.17□□□□□ -1.12e-7■□□□□ 8.5
UPF1Q92900 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC8.14□□□□□ -1.112e-6■□□□□ 8.5
UPF1Q92900 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.111e-13■□□□□ 8.5
UPF1Q92900 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC7.84□□□□□ -1.152e-6■□□□□ 8.5
UPF1Q92900 PDE4DIP-228ENST00000530062 1076 ntTSL 27.81□□□□□ -1.162e-6■□□□□ 8.5
UPF1Q92900 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.182e-6■□□□□ 8.5
UPF1Q92900 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.182e-6■□□□□ 8.5
UPF1Q92900 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.22□□□□□ -1.252e-6■□□□□ 8.5
UPF1Q92900 RAB11A-209ENST00000569896 1396 ntTSL 2 BASIC10.79□□□□□ -0.685e-12■□□□□ 8.5
UPF1Q92900 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.095e-12■□□□□ 8.5
UPF1Q92900 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.969e-11■□□□□ 8.5
UPF1Q92900 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.136e-7■□□□□ 8.5
UPF1Q92900 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.556e-7■□□□□ 8.5
UPF1Q92900 UNC13D-206ENST00000586519 403 ntTSL 523.2■■□□□ 1.32e-9■□□□□ 8.5
UPF1Q92900 UNC13D-214ENST00000590856 695 ntTSL 316.3■□□□□ 0.22e-9■□□□□ 8.5
UPF1Q92900 ANGEL1-205ENST00000557179 1427 ntTSL 2 BASIC16.13■□□□□ 0.178e-6■□□□□ 8.5
UPF1Q92900 CNIH1-206ENST00000557659 856 ntTSL 215.46■□□□□ 0.078e-6■□□□□ 8.5
UPF1Q92900 CNIH1-203ENST00000553660 785 ntTSL 2 BASIC15.12■□□□□ 0.018e-6■□□□□ 8.5
UPF1Q92900 COPA-202ENST00000368069 4664 ntTSL 1 (best) BASIC11.57□□□□□ -0.568e-6■□□□□ 8.5
UPF1Q92900 COPA-201ENST00000241704 4789 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.598e-6■□□□□ 8.5
UPF1Q92900 GID8-201ENST00000266069 4397 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.898e-6■□□□□ 8.5
UPF1Q92900 LONP1-204ENST00000586617 471 ntTSL 536.03■■■■□ 3.364e-6■□□□□ 8.5
UPF1Q92900 LONP1-205ENST00000587365 641 ntTSL 534.14■■■■□ 3.064e-6■□□□□ 8.5
UPF1Q92900 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.15■□□□□ 0.984e-6■□□□□ 8.5
UPF1Q92900 LONP1-211ENST00000590558 2884 ntTSL 521.09■□□□□ 0.974e-6■□□□□ 8.5
UPF1Q92900 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.73■□□□□ 0.594e-6■□□□□ 8.5
UPF1Q92900 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.444e-6■□□□□ 8.5
UPF1Q92900 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.71■□□□□ 0.114e-6■□□□□ 8.5
UPF1Q92900 LONP1-206ENST00000587552 2816 ntTSL 215.17■□□□□ 0.024e-6■□□□□ 8.5
UPF1Q92900 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.17□□□□□ -0.144e-6■□□□□ 8.5
UPF1Q92900 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC36.29■■■■□ 3.43e-8■□□□□ 8.4
UPF1Q92900 SPN-203ENST00000436527 1197 ntAPPRIS ALT2 TSL 1 (best)26.5■■□□□ 1.833e-8■□□□□ 8.4
UPF1Q92900 SSU72-203ENST00000378725 619 ntTSL 225.08■■□□□ 1.613e-8■□□□□ 8.4
UPF1Q92900 DLK1-203ENST00000392848 555 ntTSL 421.93■■□□□ 1.13e-8■□□□□ 8.4
UPF1Q92900 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.743e-8■□□□□ 8.4
UPF1Q92900 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC19.05■□□□□ 0.643e-8■□□□□ 8.4
UPF1Q92900 DLK1-205ENST00000556051 469 ntTSL 2 BASIC18.99■□□□□ 0.633e-8■□□□□ 8.4
UPF1Q92900 SSU72-202ENST00000359060 4176 ntTSL 2 BASIC11.36□□□□□ -0.593e-8■□□□□ 8.4
UPF1Q92900 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.52■□□□□ 0.726e-9■□□□□ 8.4
UPF1Q92900 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.446e-9■□□□□ 8.4
UPF1Q92900 FKBP10-207ENST00000490938 837 ntTSL 222.46■■□□□ 1.191e-7■□□□□ 8.4
UPF1Q92900 RHBDD2-206ENST00000467406 636 ntTSL 211.78□□□□□ -0.525e-6■□□□□ 8.4
UPF1Q92900 JPT2-211ENST00000567717 857 ntTSL 326.3■■□□□ 1.86e-7■□□□□ 8.4
UPF1Q92900 JPT2-208ENST00000566691 601 ntTSL 518.26■□□□□ 0.516e-7■□□□□ 8.4
UPF1Q92900 JPT2-210ENST00000566925 570 ntTSL 416.37■□□□□ 0.216e-7■□□□□ 8.4
UPF1Q92900 JPT2-207ENST00000565851 565 ntTSL 1 (best)16.24■□□□□ 0.196e-7■□□□□ 8.4
UPF1Q92900 AL031708.1-201ENST00000454337 5326 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.416e-7■□□□□ 8.4
UPF1Q92900 GAGE1-202ENST00000381709 3129 ntTSL 28.51□□□□□ -1.056e-7■□□□□ 8.4
UPF1Q92900 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.276e-7■□□□□ 8.4
UPF1Q92900 JPT2-212ENST00000568376 297 ntTSL 36.57□□□□□ -1.366e-7■□□□□ 8.4
UPF1Q92900 INSIG1-206ENST00000476756 1320 ntTSL 216.41■□□□□ 0.221e-20■□□□□ 8.4
UPF1Q92900 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC25.78■■□□□ 1.726e-9■□□□□ 8.3
UPF1Q92900 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC21.55■■□□□ 1.046e-9■□□□□ 8.3
UPF1Q92900 RTKN-207ENST00000472518 1105 ntTSL 1 (best)20.94■□□□□ 0.943e-7■□□□□ 8.3
UPF1Q92900 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC18.25■□□□□ 0.516e-9■□□□□ 8.3
UPF1Q92900 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC15.71■□□□□ 0.116e-9■□□□□ 8.3
UPF1Q92900 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC10.89□□□□□ -0.673e-7■□□□□ 8.3
UPF1Q92900 PGM3-203ENST00000504780 605 ntTSL 39.9□□□□□ -0.823e-7■□□□□ 8.3
UPF1Q92900 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC7.83□□□□□ -1.163e-7■□□□□ 8.3
UPF1Q92900 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.16□□□□□ -1.423e-7■□□□□ 8.3
UPF1Q92900 ZNF219-212ENST00000556944 609 ntTSL 420.24■□□□□ 0.832e-7■□□□□ 8.3
UPF1Q92900 ZNF219-209ENST00000555697 654 ntTSL 216.43■□□□□ 0.222e-7■□□□□ 8.3
UPF1Q92900 ACADSB-202ENST00000368869 1599 ntTSL 2 BASIC12.78□□□□□ -0.362e-7■□□□□ 8.3
UPF1Q92900 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC23.21■■□□□ 1.316e-21■□□□□ 8.3
UPF1Q92900 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.211e-15■□□□□ 8.3
UPF1Q92900 GDI1-207ENST00000468483 2417 ntTSL 1 (best)13.66□□□□□ -0.221e-15■□□□□ 8.3
UPF1Q92900 GDI1-214ENST00000491154 4069 ntTSL 210.33□□□□□ -0.761e-15■□□□□ 8.3
UPF1Q92900 SELENOP-206ENST00000509276 738 ntTSL 514.14□□□□□ -0.159e-31■□□□□ 8.3
UPF1Q92900 SELENOP-212ENST00000514218 1047 ntTSL 511.85□□□□□ -0.519e-31■□□□□ 8.3
UPF1Q92900 AKT2-239ENST00000583859 567 ntTSL 535.87■■■■□ 3.338e-6■□□□□ 8.3
UPF1Q92900 AKT2-214ENST00000456441 582 ntTSL 332.43■■■□□ 2.788e-6■□□□□ 8.3
UPF1Q92900 EHBP1L1-211ENST00000634639 1643 ntTSL 531.74■■■□□ 2.678e-6■□□□□ 8.3
UPF1Q92900 EHBP1L1-208ENST00000533237 2267 ntTSL 527.72■■■□□ 2.038e-6■□□□□ 8.3
Retrieved 100 of 15,879 protein–RNA pairs in 318.8 ms