RNA–Protein interactions for RNA: ENST00000627328.2

PTP4A2-220, Transcript of protein tyrosine phosphatase type IVA, member 2, humanhuman

TSL 5 BASIC

Gene PTP4A2, Length 615 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A2-220ENST00000627328 AEBP2Q6ZN18 517 aaPredicted RBP25.22■■□□□ 1.63
PTP4A2-220ENST00000627328 CHIC1Q5VXU3 224 aa23.71■■□□□ 1.39
PTP4A2-220ENST00000627328 SENP3Q9H4L4 574 aaPredicted RBP21.78■■□□□ 1.08
PTP4A2-220ENST00000627328 PHF23Q9BUL5 403 aaPredicted RBP21.32■■□□□ 1
PTP4A2-220ENST00000627328 FOXD1Q16676 465 aa20.29■□□□□ 0.84
PTP4A2-220ENST00000627328 POTEDQ86YR6 584 aa20.2■□□□□ 0.82
PTP4A2-220ENST00000627328 MSH5O43196 834 aa19.43■□□□□ 0.7
PTP4A2-220ENST00000627328 PIAS4Q8N2W9 510 aaPredicted RBP18.82■□□□□ 0.6
PTP4A2-220ENST00000627328 PPP6R1Q9UPN7 881 aa18.32■□□□□ 0.52
PTP4A2-220ENST00000627328 PLPPR3Q6T4P5 718 aa18.29■□□□□ 0.52
PTP4A2-220ENST00000627328 ADRA2BP18089 450 aa18.24■□□□□ 0.51
PTP4A2-220ENST00000627328 CACNB1Q02641 598 aaPredicted RBP17.11■□□□□ 0.33
PTP4A2-220ENST00000627328 DMRT2Q9Y5R5 561 aa17.11■□□□□ 0.33
PTP4A2-220ENST00000627328 MAPK8IP2Q13387 824 aaPredicted RBP16.97■□□□□ 0.31
PTP4A2-220ENST00000627328 SCAF1Q9H7N4 1312 aaKnown RBP16.87■□□□□ 0.29
PTP4A2-220ENST00000627328 DCAF8L1A6NGE4 600 aa16.46■□□□□ 0.23
PTP4A2-220ENST00000627328 RNF39Q9H2S5 420 aa16.44■□□□□ 0.22
PTP4A2-220ENST00000627328 C1QBPQ07021 282 aaKnown RBP16.21■□□□□ 0.19
PTP4A2-220ENST00000627328 HOXD11P31277 338 aaPredicted RBP16.17■□□□□ 0.18
PTP4A2-220ENST00000627328 PPP4R3CPQ6ZMV5 832 aa15.88■□□□□ 0.13
PTP4A2-220ENST00000627328 RNF216Q9NWF9 866 aaPredicted RBP15.86■□□□□ 0.13
PTP4A2-220ENST00000627328 DNAJC5BQ9UF47 199 aa15.86■□□□□ 0.13
PTP4A2-220ENST00000627328 CNKSR2Q8WXI2 1034 aa15.81■□□□□ 0.12
PTP4A2-220ENST00000627328 POTEHQ6S545 545 aa15.71■□□□□ 0.11
PTP4A2-220ENST00000627328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.44■□□□□ 0.06
PTP4A2-220ENST00000627328 NCBP3Q53F19 620 aaKnown RBP15.13■□□□□ 0.01
PTP4A2-220ENST00000627328 DSG3P32926 999 aa15.11■□□□□ 0.01
PTP4A2-220ENST00000627328 CAPN15O75808 1086 aa15.04■□□□□ -0
PTP4A2-220ENST00000627328 SPINK5Q9NQ38 1064 aaPredicted RBP14.95□□□□□ -0.02
PTP4A2-220ENST00000627328 U3KPZ7 1027 aaPredicted RBP14.95□□□□□ -0.02
PTP4A2-220ENST00000627328 NPM3O75607 178 aaKnown RBP14.78□□□□□ -0.04
PTP4A2-220ENST00000627328 APLP2Q06481 763 aa14.65□□□□□ -0.06
PTP4A2-220ENST00000627328 ZNF219Q9P2Y4 722 aaPredicted RBP14.61□□□□□ -0.07
PTP4A2-220ENST00000627328 TRHP20396 242 aaPredicted RBP14.59□□□□□ -0.07
PTP4A2-220ENST00000627328 ABCB7O75027 752 aa14.57□□□□□ -0.08
PTP4A2-220ENST00000627328 RBM42Q9BTD8 480 aaKnown RBP14.56□□□□□ -0.08
PTP4A2-220ENST00000627328 CHRDL2Q6WN34 429 aa14.47□□□□□ -0.09
PTP4A2-220ENST00000627328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.41□□□□□ -0.1
PTP4A2-220ENST00000627328 HNRNPUL2Q1KMD3 747 aaKnown RBP14.41□□□□□ -0.1
PTP4A2-220ENST00000627328 SP7Q8TDD2 431 aaPredicted RBP14.36□□□□□ -0.11
PTP4A2-220ENST00000627328 SLC4A2P04920 1241 aa14.29□□□□□ -0.12
PTP4A2-220ENST00000627328 SAMD1Q6SPF0 538 aaPredicted RBP14.26□□□□□ -0.13
PTP4A2-220ENST00000627328 POLA2Q14181 598 aa14.01□□□□□ -0.17
PTP4A2-220ENST00000627328 AKT1S1Q96B36 256 aa14.01□□□□□ -0.17
PTP4A2-220ENST00000627328 HAX1O00165 279 aa13.93□□□□□ -0.18
PTP4A2-220ENST00000627328 PIP4P2Q8N4L2 257 aa13.92□□□□□ -0.18
PTP4A2-220ENST00000627328 REM2Q8IYK8 340 aaPredicted RBP13.82□□□□□ -0.2
PTP4A2-220ENST00000627328 ZBTB12Q9Y330 459 aaPredicted RBP13.79□□□□□ -0.2
PTP4A2-220ENST00000627328 MYCNP04198 464 aaPredicted RBP13.76□□□□□ -0.21
PTP4A2-220ENST00000627328 KCNA4P22459 653 aa13.76□□□□□ -0.21
PTP4A2-220ENST00000627328 FXR2P51116 673 aaKnown RBP eCLIP13.73□□□□□ -0.21
PTP4A2-220ENST00000627328 PITPNM1O00562 1244 aa13.66□□□□□ -0.22
PTP4A2-220ENST00000627328 OSCARQ8IYS5 282 aa13.58□□□□□ -0.24
PTP4A2-220ENST00000627328 EVX2Q03828 476 aa13.57□□□□□ -0.24
PTP4A2-220ENST00000627328 LHX8Q68G74 356 aa13.46□□□□□ -0.25
PTP4A2-220ENST00000627328 ATF5Q9Y2D1 282 aaPredicted RBP13.38□□□□□ -0.27
PTP4A2-220ENST00000627328 PRKAR2AP13861 404 aaKnown RBP13.33□□□□□ -0.28
PTP4A2-220ENST00000627328 C19orf67A6NJJ6 358 aa13.32□□□□□ -0.28
PTP4A2-220ENST00000627328 GABBR2O75899 941 aa13.31□□□□□ -0.28
PTP4A2-220ENST00000627328 PLSCR2Q9NRY7 297 aa13.26□□□□□ -0.29
PTP4A2-220ENST00000627328 SPDYE2BA6NHP3 402 aa13.25□□□□□ -0.29
PTP4A2-220ENST00000627328 SPDYE6P0CI01 402 aa13.25□□□□□ -0.29
PTP4A2-220ENST00000627328 SPDYE2Q495Y8 402 aa13.25□□□□□ -0.29
PTP4A2-220ENST00000627328 SPDYE1Q8NFV5 336 aaPredicted RBP13.22□□□□□ -0.29
PTP4A2-220ENST00000627328 FOXD4L1Q9NU39 408 aa13.18□□□□□ -0.3
PTP4A2-220ENST00000627328 CLEC11AQ9Y240 323 aa13.18□□□□□ -0.3
PTP4A2-220ENST00000627328 FBLN2P98095 1184 aa13.08□□□□□ -0.32
PTP4A2-220ENST00000627328 CLCN6P51797 869 aa12.99□□□□□ -0.33
PTP4A2-220ENST00000627328 POTEIP0CG38 1075 aa12.95□□□□□ -0.34
PTP4A2-220ENST00000627328 CHADLQ6NUI6 762 aa12.95□□□□□ -0.34
PTP4A2-220ENST00000627328 ZNF692Q9BU19 519 aaPredicted RBP12.94□□□□□ -0.34
PTP4A2-220ENST00000627328 SSUH2Q9Y2M2 353 aa12.93□□□□□ -0.34
PTP4A2-220ENST00000627328 ATXN8OSP0DMR3 200 aa12.91□□□□□ -0.34
PTP4A2-220ENST00000627328 SLC4A1APQ9BWU0 796 aaKnown RBP12.9□□□□□ -0.34
PTP4A2-220ENST00000627328 PRR29P0C7W0 189 aa12.88□□□□□ -0.35
PTP4A2-220ENST00000627328 CD44P16070 742 aaKnown RBP12.87□□□□□ -0.35
PTP4A2-220ENST00000627328 DCBLD2Q96PD2 775 aa12.85□□□□□ -0.35
PTP4A2-220ENST00000627328 FARP1Q9Y4F1 1045 aaPredicted RBP12.74□□□□□ -0.37
PTP4A2-220ENST00000627328 MKRN4PQ13434 485 aaPredicted RBP12.73□□□□□ -0.37
PTP4A2-220ENST00000627328 POTEMA6NI47 508 aa12.71□□□□□ -0.37
PTP4A2-220ENST00000627328 PABPN1Q86U42 306 aaKnown RBP eCLIP12.69□□□□□ -0.38
PTP4A2-220ENST00000627328 OTUD5Q96G74 571 aa12.67□□□□□ -0.38
PTP4A2-220ENST00000627328 PCDH10Q9P2E7 1040 aa12.66□□□□□ -0.38
PTP4A2-220ENST00000627328 POTEGQ6S5H5 508 aa12.64□□□□□ -0.39
PTP4A2-220ENST00000627328 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
PTP4A2-220ENST00000627328 ZBTB22O15209 634 aa12.59□□□□□ -0.39
PTP4A2-220ENST00000627328 ZRANB1Q9UGI0 708 aa12.56□□□□□ -0.4
PTP4A2-220ENST00000627328 POTEB2H3BUK9 544 aa12.5□□□□□ -0.41
PTP4A2-220ENST00000627328 GALR2O43603 387 aaPredicted RBP12.48□□□□□ -0.41
PTP4A2-220ENST00000627328 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
PTP4A2-220ENST00000627328 MAMSTRQ6ZN01 415 aa12.35□□□□□ -0.43
PTP4A2-220ENST00000627328 CREBZFQ9NS37 354 aa12.31□□□□□ -0.44
PTP4A2-220ENST00000627328 PELP1Q8IZL8 1130 aaKnown RBP12.28□□□□□ -0.44
PTP4A2-220ENST00000627328 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
PTP4A2-220ENST00000627328 METRNQ9UJH8 293 aa12.28□□□□□ -0.44
PTP4A2-220ENST00000627328 C7P10643 843 aa12.27□□□□□ -0.45
PTP4A2-220ENST00000627328 SLC39A7Q92504 469 aa12.27□□□□□ -0.45
PTP4A2-220ENST00000627328 PHF12Q96QT6 1004 aa12.27□□□□□ -0.45
PTP4A2-220ENST00000627328 FAM163AQ96GL9 167 aaPredicted RBP12.24□□□□□ -0.45
PTP4A2-220ENST00000627328 ASTLQ6HA08 431 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms