Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 STK25P1-201ENST00000585406 838 ntBASIC19.64■□□□□ 0.73
LIG1P18858 AL138831.2-201ENST00000606564 490 ntBASIC19.64■□□□□ 0.73
LIG1P18858 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.64■□□□□ 0.73
LIG1P18858 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 AL135999.2-201ENST00000622438 1686 ntBASIC19.64■□□□□ 0.73
LIG1P18858 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.64■□□□□ 0.73
LIG1P18858 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.64■□□□□ 0.73
LIG1P18858 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIG1P18858 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 AL391005.1-201ENST00000623953 2435 ntBASIC19.63■□□□□ 0.73
LIG1P18858 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.63■□□□□ 0.73
LIG1P18858 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LIG1P18858 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 TP73-AS1-210ENST00000637775 1455 ntBASIC19.63■□□□□ 0.73
LIG1P18858 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.63■□□□□ 0.73
LIG1P18858 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.63■□□□□ 0.73
LIG1P18858 AC122714.2-201ENST00000502787 707 ntBASIC19.63■□□□□ 0.73
LIG1P18858 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.63■□□□□ 0.73
LIG1P18858 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.63■□□□□ 0.73
LIG1P18858 FICD-205ENST00000552758 603 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 AC111152.3-201ENST00000569699 673 ntBASIC19.63■□□□□ 0.73
LIG1P18858 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 LINC01711-201ENST00000598340 967 ntBASIC19.63■□□□□ 0.73
LIG1P18858 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.63■□□□□ 0.73
LIG1P18858 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.63■□□□□ 0.73
LIG1P18858 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.63■□□□□ 0.73
LIG1P18858 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
LIG1P18858 PCDHB17P-201ENST00000539533 2393 ntBASIC19.63■□□□□ 0.73
LIG1P18858 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.63■□□□□ 0.73
LIG1P18858 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIG1P18858 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.62■□□□□ 0.73
LIG1P18858 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG1P18858 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.62■□□□□ 0.73
LIG1P18858 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.62■□□□□ 0.73
LIG1P18858 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
LIG1P18858 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 RCN1P2-201ENST00000398357 915 ntBASIC19.62■□□□□ 0.73
LIG1P18858 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.62■□□□□ 0.73
LIG1P18858 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.62■□□□□ 0.73
LIG1P18858 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.62■□□□□ 0.73
LIG1P18858 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.62■□□□□ 0.73
LIG1P18858 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.62■□□□□ 0.73
LIG1P18858 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.62■□□□□ 0.73
LIG1P18858 AL691432.3-201ENST00000621860 400 ntBASIC19.62■□□□□ 0.73
LIG1P18858 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC19.62■□□□□ 0.73
LIG1P18858 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIG1P18858 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LIG1P18858 AC092364.2-201ENST00000596710 2692 ntBASIC19.62■□□□□ 0.73
LIG1P18858 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIG1P18858 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
LIG1P18858 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LIG1P18858 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.61■□□□□ 0.73
LIG1P18858 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.61■□□□□ 0.73
LIG1P18858 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LIG1P18858 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LIG1P18858 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
LIG1P18858 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms