Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KRT8P23-201ENST00000560090 1207 ntBASIC17.54■□□□□ 0.4
HMGA1P17096 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.54■□□□□ 0.4
HMGA1P17096 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HMGA1P17096 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
HMGA1P17096 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
HMGA1P17096 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGA1P17096 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HMGA1P17096 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 MIR770-201ENST00000390219 98 ntBASIC17.53■□□□□ 0.4
HMGA1P17096 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGA1P17096 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGA1P17096 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.53■□□□□ 0.4
HMGA1P17096 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGA1P17096 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGA1P17096 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HMGA1P17096 Z92544.3-201ENST00000624747 417 ntBASIC17.53■□□□□ 0.4
HMGA1P17096 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HMGA1P17096 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGA1P17096 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGA1P17096 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HMGA1P17096 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
HMGA1P17096 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGA1P17096 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 TUBB8P12-201ENST00000308911 1335 ntBASIC17.52■□□□□ 0.4
HMGA1P17096 TUBB7P-202ENST00000428444 1305 ntBASIC17.52■□□□□ 0.4
HMGA1P17096 TUBB8P7-204ENST00000567960 1332 ntBASIC17.52■□□□□ 0.4
HMGA1P17096 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 AC092068.3-201ENST00000587894 2016 ntBASIC17.52■□□□□ 0.4
HMGA1P17096 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
HMGA1P17096 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGA1P17096 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGA1P17096 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.52■□□□□ 0.4
HMGA1P17096 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
HMGA1P17096 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGA1P17096 IGHV3-62-201ENST00000520057 340 ntBASIC17.52■□□□□ 0.4
HMGA1P17096 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGA1P17096 AP001059.3-201ENST00000619053 235 ntBASIC17.52■□□□□ 0.4
HMGA1P17096 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGA1P17096 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HMGA1P17096 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.52■□□□□ 0.4
HMGA1P17096 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGA1P17096 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGA1P17096 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGA1P17096 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
HMGA1P17096 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGA1P17096 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HMGA1P17096 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
HMGA1P17096 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGA1P17096 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGA1P17096 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 MIR346-201ENST00000362234 95 ntBASIC17.51■□□□□ 0.39
HMGA1P17096 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
HMGA1P17096 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
HMGA1P17096 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.51■□□□□ 0.39
HMGA1P17096 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGA1P17096 RBPMS2P1-201ENST00000437762 623 ntBASIC17.51■□□□□ 0.39
HMGA1P17096 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGA1P17096 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGA1P17096 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGA1P17096 AL138918.1-201ENST00000568306 659 ntBASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms