Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
APOBP04114 AC015936.2-201ENST00000593177 259 ntBASIC10.44□□□□□ -0.74
APOBP04114 5S_rRNA.22-201ENST00000614916 106 ntBASIC10.44□□□□□ -0.74
APOBP04114 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC10.44□□□□□ -0.74
APOBP04114 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
APOBP04114 RAD18-204ENST00000418463 563 ntTSL 4 BASIC10.44□□□□□ -0.74
APOBP04114 RAD18-205ENST00000421052 582 ntTSL 3 BASIC10.44□□□□□ -0.74
APOBP04114 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC10.44□□□□□ -0.74
APOBP04114 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC10.44□□□□□ -0.74
APOBP04114 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC10.44□□□□□ -0.74
APOBP04114 AC244093.1-201ENST00000610837 814 ntBASIC10.44□□□□□ -0.74
APOBP04114 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
APOBP04114 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC10.44□□□□□ -0.74
APOBP04114 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC10.44□□□□□ -0.74
APOBP04114 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC10.44□□□□□ -0.74
APOBP04114 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
APOBP04114 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC10.44□□□□□ -0.74
APOBP04114 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
APOBP04114 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC10.43□□□□□ -0.74
APOBP04114 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC10.43□□□□□ -0.74
APOBP04114 MPDU1-223ENST00000582151 728 ntBASIC10.43□□□□□ -0.74
APOBP04114 AC243960.2-201ENST00000600996 747 ntBASIC10.43□□□□□ -0.74
APOBP04114 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
APOBP04114 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC10.43□□□□□ -0.74
APOBP04114 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 FOS-208ENST00000555686 1496 ntTSL 2 BASIC10.43□□□□□ -0.74
APOBP04114 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC10.43□□□□□ -0.74
APOBP04114 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC10.43□□□□□ -0.74
APOBP04114 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC10.43□□□□□ -0.74
APOBP04114 AC093726.1-201ENST00000608064 963 ntBASIC10.43□□□□□ -0.74
APOBP04114 PPA1-206ENST00000625364 644 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC10.43□□□□□ -0.74
APOBP04114 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC10.43□□□□□ -0.74
APOBP04114 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC10.43□□□□□ -0.74
APOBP04114 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC10.43□□□□□ -0.74
APOBP04114 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC10.43□□□□□ -0.74
APOBP04114 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC10.43□□□□□ -0.74
APOBP04114 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 TECR-220ENST00000600083 1204 ntTSL 2 BASIC10.43□□□□□ -0.74
APOBP04114 RPS24-214ENST00000613865 538 ntTSL 5 BASIC10.43□□□□□ -0.74
APOBP04114 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.74
APOBP04114 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC10.42□□□□□ -0.74
APOBP04114 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC10.42□□□□□ -0.74
APOBP04114 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 GOLGA2P9-201ENST00000596977 1937 ntBASIC10.42□□□□□ -0.74
APOBP04114 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC10.42□□□□□ -0.74
APOBP04114 TNXA-203ENST00000507684 2038 ntBASIC10.42□□□□□ -0.74
APOBP04114 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC10.42□□□□□ -0.74
APOBP04114 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC10.42□□□□□ -0.74
APOBP04114 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC10.42□□□□□ -0.74
APOBP04114 RETN-203ENST00000629642 400 ntTSL 5 BASIC10.42□□□□□ -0.74
APOBP04114 NOC2LP1-202ENST00000452600 2235 ntBASIC10.42□□□□□ -0.74
APOBP04114 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC10.42□□□□□ -0.74
APOBP04114 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC10.42□□□□□ -0.74
APOBP04114 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC10.42□□□□□ -0.74
APOBP04114 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 AC006538.1-201ENST00000567905 1585 ntBASIC10.42□□□□□ -0.74
APOBP04114 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
APOBP04114 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC10.42□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms