Protein–RNA interactions for Protein: O43395

PRPF3, U4/U6 small nuclear ribonucleoprotein Prp3, humanhuman

Known RBP Predictions only

Length 683 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3O43395 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
PRPF3O43395 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
PRPF3O43395 LBH-204ENST00000406087 559 ntTSL 4 BASIC19.55■□□□□ 0.72
PRPF3O43395 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.55■□□□□ 0.72
PRPF3O43395 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 AC091167.2-201ENST00000579581 588 ntBASIC19.55■□□□□ 0.72
PRPF3O43395 AC005412.3-201ENST00000580309 715 ntBASIC19.55■□□□□ 0.72
PRPF3O43395 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.55■□□□□ 0.72
PRPF3O43395 ACTL9-202ENST00000612068 1252 ntBASIC19.55■□□□□ 0.72
PRPF3O43395 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
PRPF3O43395 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.55■□□□□ 0.72
PRPF3O43395 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRPF3O43395 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.55■□□□□ 0.72
PRPF3O43395 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.55■□□□□ 0.72
PRPF3O43395 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.54■□□□□ 0.72
PRPF3O43395 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.54■□□□□ 0.72
PRPF3O43395 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.54■□□□□ 0.72
PRPF3O43395 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.54■□□□□ 0.72
PRPF3O43395 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
PRPF3O43395 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PRPF3O43395 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.54■□□□□ 0.72
PRPF3O43395 CXCL1P1-201ENST00000502804 216 ntBASIC19.54■□□□□ 0.72
PRPF3O43395 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.54■□□□□ 0.72
PRPF3O43395 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.54■□□□□ 0.72
PRPF3O43395 AC106730.1-201ENST00000566722 1090 ntBASIC19.54■□□□□ 0.72
PRPF3O43395 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.54■□□□□ 0.72
PRPF3O43395 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
PRPF3O43395 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PRPF3O43395 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC19.54■□□□□ 0.72
PRPF3O43395 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PRPF3O43395 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.54■□□□□ 0.72
PRPF3O43395 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.53■□□□□ 0.72
PRPF3O43395 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.53■□□□□ 0.72
PRPF3O43395 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.53■□□□□ 0.72
PRPF3O43395 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PRPF3O43395 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.53■□□□□ 0.72
PRPF3O43395 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
PRPF3O43395 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.53■□□□□ 0.72
PRPF3O43395 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.53■□□□□ 0.72
PRPF3O43395 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
PRPF3O43395 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
PRPF3O43395 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.53■□□□□ 0.72
PRPF3O43395 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.53■□□□□ 0.72
PRPF3O43395 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.53■□□□□ 0.72
PRPF3O43395 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
PRPF3O43395 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PRPF3O43395 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
PRPF3O43395 AC011676.5-201ENST00000624864 2660 ntBASIC19.52■□□□□ 0.72
PRPF3O43395 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.52■□□□□ 0.72
PRPF3O43395 AC131009.4-201ENST00000624048 1740 ntBASIC19.52■□□□□ 0.72
PRPF3O43395 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
PRPF3O43395 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.52■□□□□ 0.72
PRPF3O43395 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.52■□□□□ 0.72
PRPF3O43395 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.52■□□□□ 0.72
PRPF3O43395 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PRPF3O43395 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.52■□□□□ 0.72
PRPF3O43395 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.52■□□□□ 0.72
PRPF3O43395 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.52■□□□□ 0.72
PRPF3O43395 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
PRPF3O43395 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms