Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 HTR5BP-201ENST00000430851 1154 ntBASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CHMP4AQ9BY43 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 AC131009.4-201ENST00000624048 1740 ntBASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 PKD1P1-201ENST00000458669 6805 ntBASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 PMS2P4-201ENST00000412466 1052 ntBASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 AC010327.4-202ENST00000591484 748 ntBASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 AC139530.3-201ENST00000620344 690 ntBASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 LTB4R2-202ENST00000528054 3092 ntBASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CHMP4AQ9BY43 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 FAM86C2P-203ENST00000528684 1004 ntBASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 AP002472.1-201ENST00000577490 586 ntBASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 AL161645.1-201ENST00000622716 1255 ntBASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CHMP4AQ9BY43 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC21.64■■□□□ 1.06
CHMP4AQ9BY43 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP4AQ9BY43 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP4AQ9BY43 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP4AQ9BY43 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP4AQ9BY43 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.64■■□□□ 1.06
CHMP4AQ9BY43 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CHMP4AQ9BY43 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 STARD13-205ENST00000439831 945 ntTSL 2 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 DHDH-204ENST00000523250 634 ntTSL 5 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 AC109635.5-201ENST00000533593 962 ntBASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 AC013467.2-201ENST00000605472 835 ntBASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CHMP4AQ9BY43 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms