Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 TMPOP1-202ENST00000424642 1267 ntBASIC12.81□□□□□ -0.36
LINC00477Q96M19 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 RN7SL850P-201ENST00000579959 291 ntBASIC12.81□□□□□ -0.36
LINC00477Q96M19 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 AC078925.2-201ENST00000624013 1973 ntBASIC12.81□□□□□ -0.36
LINC00477Q96M19 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 MINOS1P3-201ENST00000457048 203 ntBASIC12.8□□□□□ -0.36
LINC00477Q96M19 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 KRT18P1-202ENST00000452408 1331 ntBASIC12.8□□□□□ -0.36
LINC00477Q96M19 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC12.8□□□□□ -0.36
LINC00477Q96M19 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 AC016734.2-201ENST00000624325 1377 ntBASIC12.8□□□□□ -0.36
LINC00477Q96M19 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 AC068587.6-202ENST00000641839 5619 ntBASIC12.8□□□□□ -0.36
LINC00477Q96M19 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LINC00477Q96M19 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
LINC00477Q96M19 GUK1-204ENST00000366721 689 ntTSL 3 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
LINC00477Q96M19 RCN1P1-201ENST00000400413 996 ntBASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms