Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AL009183.1-201ENST00000603760 355 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AC093512.1-201ENST00000617969 520 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AC067852.2-201ENST00000590513 2313 ntBASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RNFT1Q5M7Z0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 TOP3BP1-201ENST00000420768 1380 ntBASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 MIR770-201ENST00000390219 98 ntBASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 FAM58DP-201ENST00000428076 619 ntBASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 RARRES2P8-201ENST00000566335 367 ntBASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 AC009093.7-201ENST00000623853 1223 ntBASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 GNAS-203ENST00000306120 1878 ntBASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RNFT1Q5M7Z0 FRMD8P1-201ENST00000440433 1524 ntBASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 AC090340.1-201ENST00000620778 4980 ntBASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 AC069335.1-201ENST00000489972 472 ntBASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 AC025678.2-201ENST00000562061 970 ntBASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RNFT1Q5M7Z0 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
RNFT1Q5M7Z0 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms