Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC19.74■□□□□ 0.75
SF3A1Q15459 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SF3A1Q15459 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.74■□□□□ 0.75
SF3A1Q15459 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SF3A1Q15459 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SF3A1Q15459 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
SF3A1Q15459 POM121L3P-201ENST00000419331 1163 ntBASIC19.74■□□□□ 0.75
SF3A1Q15459 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SF3A1Q15459 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.74■□□□□ 0.75
SF3A1Q15459 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 AC124947.2-201ENST00000547118 1133 ntBASIC19.74■□□□□ 0.75
SF3A1Q15459 AC012615.1-201ENST00000565797 1299 ntBASIC19.74■□□□□ 0.75
SF3A1Q15459 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SF3A1Q15459 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.74■□□□□ 0.75
SF3A1Q15459 AP000867.4-201ENST00000641616 219 ntBASIC19.74■□□□□ 0.75
SF3A1Q15459 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.74■□□□□ 0.75
SF3A1Q15459 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SF3A1Q15459 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SF3A1Q15459 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
SF3A1Q15459 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
SF3A1Q15459 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.73■□□□□ 0.75
SF3A1Q15459 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.73■□□□□ 0.75
SF3A1Q15459 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.73■□□□□ 0.75
SF3A1Q15459 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.73■□□□□ 0.75
SF3A1Q15459 AC099336.1-202ENST00000602961 463 ntBASIC19.73■□□□□ 0.75
SF3A1Q15459 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
SF3A1Q15459 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SF3A1Q15459 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SF3A1Q15459 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SF3A1Q15459 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.72■□□□□ 0.75
SF3A1Q15459 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.72■□□□□ 0.75
SF3A1Q15459 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.72■□□□□ 0.75
SF3A1Q15459 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.72■□□□□ 0.75
SF3A1Q15459 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.72■□□□□ 0.75
SF3A1Q15459 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.72■□□□□ 0.75
SF3A1Q15459 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.72■□□□□ 0.75
SF3A1Q15459 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SF3A1Q15459 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SF3A1Q15459 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SF3A1Q15459 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms