Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.52■□□□□ 0.24
FOXA1P55317 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
FOXA1P55317 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
FOXA1P55317 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
FOXA1P55317 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.52■□□□□ 0.24
FOXA1P55317 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.52■□□□□ 0.24
FOXA1P55317 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.52■□□□□ 0.24
FOXA1P55317 AC092329.2-201ENST00000598402 547 ntBASIC16.52■□□□□ 0.24
FOXA1P55317 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.52■□□□□ 0.24
FOXA1P55317 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.52■□□□□ 0.24
FOXA1P55317 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
FOXA1P55317 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA1P55317 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA1P55317 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.52■□□□□ 0.23
FOXA1P55317 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA1P55317 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.52■□□□□ 0.23
FOXA1P55317 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.52■□□□□ 0.23
FOXA1P55317 SIGLEC16-201ENST00000599858 1437 ntBASIC16.52■□□□□ 0.23
FOXA1P55317 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.23
FOXA1P55317 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
FOXA1P55317 AC026691.1-201ENST00000602502 2017 ntBASIC16.52■□□□□ 0.23
FOXA1P55317 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 AL391005.1-201ENST00000623953 2435 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
FOXA1P55317 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 TUBB8P12-201ENST00000308911 1335 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 TUBB7P-202ENST00000428444 1305 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 TUBB8P7-204ENST00000567960 1332 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXA1P55317 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXA1P55317 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXA1P55317 POM121L3P-201ENST00000419331 1163 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 LINC00982-205ENST00000420957 435 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXA1P55317 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 AC104819.1-201ENST00000504587 486 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXA1P55317 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.51■□□□□ 0.23
FOXA1P55317 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXA1P55317 AC099336.1-202ENST00000602961 463 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.51■□□□□ 0.23
FOXA1P55317 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.51■□□□□ 0.23
FOXA1P55317 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.51■□□□□ 0.23
FOXA1P55317 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
FOXA1P55317 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
FOXA1P55317 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.51■□□□□ 0.23
FOXA1P55317 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
FOXA1P55317 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA1P55317 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA1P55317 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
FOXA1P55317 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.5■□□□□ 0.23
FOXA1P55317 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
FOXA1P55317 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
FOXA1P55317 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
FOXA1P55317 ABCD1P5-201ENST00000445663 754 ntBASIC16.5■□□□□ 0.23
FOXA1P55317 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.5■□□□□ 0.23
FOXA1P55317 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms