Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC068587.10-201ENST00000641210 219 ntBASIC23.32■■□□□ 1.32
MSH6P52701 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC23.32■■□□□ 1.32
MSH6P52701 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
MSH6P52701 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC23.32■■□□□ 1.32
MSH6P52701 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC23.32■■□□□ 1.32
MSH6P52701 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC23.32■■□□□ 1.32
MSH6P52701 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC23.32■■□□□ 1.32
MSH6P52701 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC23.32■■□□□ 1.32
MSH6P52701 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC23.31■■□□□ 1.32
MSH6P52701 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH6P52701 AC104581.1-202ENST00000635932 2618 ntBASIC23.31■■□□□ 1.32
MSH6P52701 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC23.31■■□□□ 1.32
MSH6P52701 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
MSH6P52701 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 CD81-207ENST00000481687 890 ntTSL 2 BASIC23.31■■□□□ 1.32
MSH6P52701 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH6P52701 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC23.31■■□□□ 1.32
MSH6P52701 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC23.31■■□□□ 1.32
MSH6P52701 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 AC009113.1-201ENST00000570267 2443 ntBASIC23.31■■□□□ 1.32
MSH6P52701 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC23.31■■□□□ 1.32
MSH6P52701 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
MSH6P52701 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC23.31■■□□□ 1.32
MSH6P52701 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC23.31■■□□□ 1.32
MSH6P52701 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC23.31■■□□□ 1.32
MSH6P52701 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MSH6P52701 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC23.31■■□□□ 1.32
MSH6P52701 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
MSH6P52701 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC23.3■■□□□ 1.32
MSH6P52701 FAM220BP-201ENST00000377689 816 ntBASIC23.3■■□□□ 1.32
MSH6P52701 AC004945.1-201ENST00000416738 983 ntBASIC23.3■■□□□ 1.32
MSH6P52701 HIST1H2BPS3-201ENST00000419683 341 ntBASIC23.3■■□□□ 1.32
MSH6P52701 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC23.3■■□□□ 1.32
MSH6P52701 KRT18P34-201ENST00000488218 1270 ntBASIC23.3■■□□□ 1.32
MSH6P52701 AC021097.1-201ENST00000607902 574 ntBASIC23.3■■□□□ 1.32
MSH6P52701 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
MSH6P52701 TOP3BP1-201ENST00000420768 1380 ntBASIC23.3■■□□□ 1.32
MSH6P52701 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC23.3■■□□□ 1.32
MSH6P52701 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC23.3■■□□□ 1.32
MSH6P52701 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.3■■□□□ 1.32
MSH6P52701 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC23.3■■□□□ 1.32
MSH6P52701 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC23.3■■□□□ 1.32
MSH6P52701 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC23.3■■□□□ 1.32
MSH6P52701 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC23.3■■□□□ 1.32
MSH6P52701 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
MSH6P52701 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MSH6P52701 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH6P52701 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC23.29■■□□□ 1.32
MSH6P52701 SPDYE18-201ENST00000510091 1050 ntBASIC23.29■■□□□ 1.32
MSH6P52701 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH6P52701 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH6P52701 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
MSH6P52701 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
MSH6P52701 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
MSH6P52701 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 REXO1L9P-201ENST00000604264 2108 ntBASIC23.29■■□□□ 1.32
MSH6P52701 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC23.29■■□□□ 1.32
MSH6P52701 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC23.29■■□□□ 1.32
MSH6P52701 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
MSH6P52701 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC23.29■■□□□ 1.32
MSH6P52701 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
MSH6P52701 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
MSH6P52701 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms