Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 KRT16P4-201ENST00000453883 522 ntBASIC17.19■□□□□ 0.34
CCNFP41002 BET1L-206ENST00000486280 665 ntTSL 3 BASIC17.19■□□□□ 0.34
CCNFP41002 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 STK25P1-201ENST00000585406 838 ntBASIC17.19■□□□□ 0.34
CCNFP41002 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.19■□□□□ 0.34
CCNFP41002 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 INTS4P1-201ENST00000438455 1935 ntBASIC17.18■□□□□ 0.34
CCNFP41002 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNFP41002 AC111152.3-201ENST00000569699 673 ntBASIC17.18■□□□□ 0.34
CCNFP41002 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNFP41002 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CCNFP41002 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CCNFP41002 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
CCNFP41002 PCDHA1-201ENST00000378133 2726 ntBASIC17.18■□□□□ 0.34
CCNFP41002 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CCNFP41002 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.18■□□□□ 0.34
CCNFP41002 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.17■□□□□ 0.34
CCNFP41002 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCNFP41002 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CCNFP41002 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 RCN1P2-201ENST00000398357 915 ntBASIC17.17■□□□□ 0.34
CCNFP41002 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.17■□□□□ 0.34
CCNFP41002 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.17■□□□□ 0.34
CCNFP41002 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.17■□□□□ 0.34
CCNFP41002 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.17■□□□□ 0.34
CCNFP41002 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.17■□□□□ 0.34
CCNFP41002 AL121772.3-201ENST00000610840 674 ntBASIC17.17■□□□□ 0.34
CCNFP41002 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.17■□□□□ 0.34
CCNFP41002 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.17■□□□□ 0.34
CCNFP41002 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CCNFP41002 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms