Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLPTM1O96005 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.17■□□□□ 0.18
CLPTM1O96005 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.17■□□□□ 0.18
CLPTM1O96005 TERF1P1-201ENST00000311003 1181 ntBASIC16.17■□□□□ 0.18
CLPTM1O96005 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLPTM1O96005 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.17■□□□□ 0.18
CLPTM1O96005 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.17■□□□□ 0.18
CLPTM1O96005 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC16.17■□□□□ 0.18
CLPTM1O96005 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.17■□□□□ 0.18
CLPTM1O96005 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.17■□□□□ 0.18
CLPTM1O96005 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.17■□□□□ 0.18
CLPTM1O96005 MIR4674-201ENST00000582457 87 ntBASIC16.17■□□□□ 0.18
CLPTM1O96005 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.17■□□□□ 0.18
CLPTM1O96005 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.17■□□□□ 0.18
CLPTM1O96005 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CLPTM1O96005 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CLPTM1O96005 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLPTM1O96005 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CLPTM1O96005 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLPTM1O96005 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.16■□□□□ 0.18
CLPTM1O96005 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLPTM1O96005 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLPTM1O96005 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLPTM1O96005 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CLPTM1O96005 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.16■□□□□ 0.18
CLPTM1O96005 LIN28AP1-201ENST00000429574 405 ntBASIC16.16■□□□□ 0.18
CLPTM1O96005 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.16■□□□□ 0.18
CLPTM1O96005 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.16■□□□□ 0.18
CLPTM1O96005 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CLPTM1O96005 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.16■□□□□ 0.18
CLPTM1O96005 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.16■□□□□ 0.18
CLPTM1O96005 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.16■□□□□ 0.18
CLPTM1O96005 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLPTM1O96005 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.16■□□□□ 0.18
CLPTM1O96005 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CLPTM1O96005 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.15■□□□□ 0.18
CLPTM1O96005 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.15■□□□□ 0.18
CLPTM1O96005 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLPTM1O96005 ATP5G1P1-201ENST00000448724 379 ntBASIC16.15■□□□□ 0.18
CLPTM1O96005 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
CLPTM1O96005 RN7SL850P-201ENST00000579959 291 ntBASIC16.15■□□□□ 0.18
CLPTM1O96005 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLPTM1O96005 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.15■□□□□ 0.18
CLPTM1O96005 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLPTM1O96005 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.14■□□□□ 0.18
CLPTM1O96005 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLPTM1O96005 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLPTM1O96005 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLPTM1O96005 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLPTM1O96005 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLPTM1O96005 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.14■□□□□ 0.17
CLPTM1O96005 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms