Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC23.62■■□□□ 1.37
NPHP4O75161 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
NPHP4O75161 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
NPHP4O75161 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
NPHP4O75161 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP4O75161 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP4O75161 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP4O75161 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
NPHP4O75161 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 SERBP1P3-201ENST00000459980 809 ntBASIC23.61■■□□□ 1.37
NPHP4O75161 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP4O75161 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP4O75161 TPI1-206ENST00000488464 791 ntTSL 5 BASIC23.61■■□□□ 1.37
NPHP4O75161 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP4O75161 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP4O75161 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP4O75161 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC23.61■■□□□ 1.37
NPHP4O75161 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC23.61■■□□□ 1.37
NPHP4O75161 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC23.61■■□□□ 1.37
NPHP4O75161 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
NPHP4O75161 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC23.61■■□□□ 1.37
NPHP4O75161 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
NPHP4O75161 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NPHP4O75161 FOS-208ENST00000555686 1496 ntTSL 2 BASIC23.6■■□□□ 1.37
NPHP4O75161 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
NPHP4O75161 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP4O75161 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC23.6■■□□□ 1.37
NPHP4O75161 AL355994.2-201ENST00000447882 704 ntBASIC23.6■■□□□ 1.37
NPHP4O75161 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC23.6■■□□□ 1.37
NPHP4O75161 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP4O75161 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC23.6■■□□□ 1.37
NPHP4O75161 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
NPHP4O75161 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC23.6■■□□□ 1.37
NPHP4O75161 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC23.6■■□□□ 1.37
NPHP4O75161 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP4O75161 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP4O75161 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP4O75161 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
NPHP4O75161 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
NPHP4O75161 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 STX1A-203ENST00000395155 783 ntTSL 2 BASIC23.59■■□□□ 1.37
NPHP4O75161 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC23.59■■□□□ 1.37
NPHP4O75161 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC23.59■■□□□ 1.37
NPHP4O75161 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC23.59■■□□□ 1.37
NPHP4O75161 AC098859.1-201ENST00000502915 1238 ntBASIC23.59■■□□□ 1.37
NPHP4O75161 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC23.59■■□□□ 1.37
NPHP4O75161 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC23.59■■□□□ 1.37
NPHP4O75161 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC23.59■■□□□ 1.37
NPHP4O75161 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC23.59■■□□□ 1.37
NPHP4O75161 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC23.59■■□□□ 1.37
NPHP4O75161 EGFEM1P-202ENST00000431685 1563 ntBASIC23.59■■□□□ 1.37
NPHP4O75161 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC23.59■■□□□ 1.37
NPHP4O75161 TUBB1P2-201ENST00000422712 1306 ntBASIC23.59■■□□□ 1.37
NPHP4O75161 TUBB1P1-201ENST00000503144 1300 ntBASIC23.59■■□□□ 1.37
NPHP4O75161 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC23.59■■□□□ 1.37
NPHP4O75161 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC23.59■■□□□ 1.37
NPHP4O75161 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC23.59■■□□□ 1.37
NPHP4O75161 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
NPHP4O75161 HLA-DQB1-201ENST00000374943 1656 ntBASIC23.59■■□□□ 1.37
NPHP4O75161 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC23.59■■□□□ 1.37
NPHP4O75161 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
NPHP4O75161 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
NPHP4O75161 RETN-203ENST00000629642 400 ntTSL 5 BASIC23.59■■□□□ 1.37
NPHP4O75161 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
NPHP4O75161 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC23.58■■□□□ 1.37
NPHP4O75161 PODN-203ENST00000395871 2744 ntTSL 5 BASIC23.58■■□□□ 1.37
NPHP4O75161 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
NPHP4O75161 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
NPHP4O75161 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
NPHP4O75161 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
NPHP4O75161 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
NPHP4O75161 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC23.58■■□□□ 1.36
NPHP4O75161 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
NPHP4O75161 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
NPHP4O75161 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC23.58■■□□□ 1.36
NPHP4O75161 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC23.58■■□□□ 1.36
NPHP4O75161 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC23.58■■□□□ 1.36
NPHP4O75161 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC23.58■■□□□ 1.36
NPHP4O75161 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.36
NPHP4O75161 QPRT-203ENST00000562473 579 ntTSL 3 BASIC23.58■■□□□ 1.36
NPHP4O75161 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
NPHP4O75161 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC23.58■■□□□ 1.36
NPHP4O75161 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC23.58■■□□□ 1.36
NPHP4O75161 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC23.58■■□□□ 1.36
NPHP4O75161 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms