Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
BRF2Q9HAW0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.33■□□□□ 0.21
BRF2Q9HAW0 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 AC139887.3-201ENST00000568585 713 ntBASIC16.33■□□□□ 0.2
BRF2Q9HAW0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 LINC01711-201ENST00000598340 967 ntBASIC16.33■□□□□ 0.2
BRF2Q9HAW0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
BRF2Q9HAW0 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 PCDHA14-201ENST00000506751 2298 ntBASIC16.32■□□□□ 0.2
BRF2Q9HAW0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
BRF2Q9HAW0 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 AL645728.1-201ENST00000366221 2101 ntBASIC16.31■□□□□ 0.2
BRF2Q9HAW0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 LINC00895-201ENST00000629028 1637 ntBASIC16.31■□□□□ 0.2
BRF2Q9HAW0 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 KRT8P49-201ENST00000604166 1432 ntBASIC16.31■□□□□ 0.2
BRF2Q9HAW0 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.31■□□□□ 0.2
BRF2Q9HAW0 SAPCD2P3-201ENST00000455031 850 ntBASIC16.31■□□□□ 0.2
BRF2Q9HAW0 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms