Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 HLA-A-202ENST00000376806 1854 ntBASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 MIR940-201ENST00000401276 94 ntBASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 AC008667.4-201ENST00000607370 168 ntBASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.37■□□□□ 0.37
SHROOM3Q8TF72 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 GGTLC5P-201ENST00000617623 998 ntBASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.36■□□□□ 0.37
SHROOM3Q8TF72 AC092171.3-201ENST00000610122 2651 ntBASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 CRYGEP-201ENST00000412192 528 ntBASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 YBX2P1-201ENST00000394192 760 ntBASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 DNAJB3-202ENST00000449667 1266 ntBASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 AC107918.2-201ENST00000530817 355 ntBASIC17.35■□□□□ 0.37
SHROOM3Q8TF72 AC018845.2-201ENST00000568326 409 ntBASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms