Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.22■□□□□ 0.35
CCNFP41002 BNIP3P18-201ENST00000593976 575 ntBASIC17.22■□□□□ 0.35
CCNFP41002 AC099336.1-202ENST00000602961 463 ntBASIC17.22■□□□□ 0.35
CCNFP41002 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.22■□□□□ 0.35
CCNFP41002 AC114341.1-201ENST00000618070 349 ntBASIC17.22■□□□□ 0.35
CCNFP41002 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.22■□□□□ 0.35
CCNFP41002 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.22■□□□□ 0.35
CCNFP41002 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CCNFP41002 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 AL049757.1-201ENST00000616842 1596 ntBASIC17.22■□□□□ 0.35
CCNFP41002 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CCNFP41002 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.22■□□□□ 0.35
CCNFP41002 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CCNFP41002 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.21■□□□□ 0.35
CCNFP41002 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.21■□□□□ 0.35
CCNFP41002 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.21■□□□□ 0.35
CCNFP41002 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.21■□□□□ 0.35
CCNFP41002 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.21■□□□□ 0.35
CCNFP41002 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.21■□□□□ 0.35
CCNFP41002 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.21■□□□□ 0.35
CCNFP41002 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.21■□□□□ 0.35
CCNFP41002 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCNFP41002 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.21■□□□□ 0.35
CCNFP41002 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
CCNFP41002 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCNFP41002 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.21■□□□□ 0.34
CCNFP41002 FRMD8P1-201ENST00000440433 1524 ntBASIC17.21■□□□□ 0.34
CCNFP41002 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCNFP41002 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
CCNFP41002 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CCNFP41002 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.2■□□□□ 0.34
CCNFP41002 HYMAI-201ENST00000635591 3347 ntBASIC17.2■□□□□ 0.34
CCNFP41002 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CCNFP41002 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCNFP41002 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.2■□□□□ 0.34
CCNFP41002 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.2■□□□□ 0.34
CCNFP41002 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.2■□□□□ 0.34
CCNFP41002 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.2■□□□□ 0.34
CCNFP41002 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
CCNFP41002 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.2■□□□□ 0.34
CCNFP41002 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.2■□□□□ 0.34
CCNFP41002 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.2■□□□□ 0.34
CCNFP41002 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCNFP41002 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
CCNFP41002 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
CCNFP41002 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.19■□□□□ 0.34
CCNFP41002 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCNFP41002 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms