Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 IGHV3-42-201ENST00000520410 361 ntBASIC20.64■□□□□ 0.9
COL4A1P02462 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL4A1P02462 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL4A1P02462 AC100757.3-201ENST00000622361 1406 ntBASIC20.64■□□□□ 0.9
COL4A1P02462 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL4A1P02462 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
COL4A1P02462 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A1P02462 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC20.64■□□□□ 0.89
COL4A1P02462 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A1P02462 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A1P02462 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A1P02462 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A1P02462 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A1P02462 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.64■□□□□ 0.89
COL4A1P02462 SERBP1P5-201ENST00000510079 1181 ntBASIC20.64■□□□□ 0.89
COL4A1P02462 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A1P02462 AC073389.1-201ENST00000595595 795 ntBASIC20.64■□□□□ 0.89
COL4A1P02462 LINC02560-201ENST00000596379 459 ntBASIC20.64■□□□□ 0.89
COL4A1P02462 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC20.64■□□□□ 0.89
COL4A1P02462 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
COL4A1P02462 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.64■□□□□ 0.89
COL4A1P02462 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL4A1P02462 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
COL4A1P02462 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
COL4A1P02462 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COL4A1P02462 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.63■□□□□ 0.89
COL4A1P02462 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.63■□□□□ 0.89
COL4A1P02462 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC20.63■□□□□ 0.89
COL4A1P02462 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.63■□□□□ 0.89
COL4A1P02462 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.63■□□□□ 0.89
COL4A1P02462 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL4A1P02462 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
COL4A1P02462 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.62■□□□□ 0.89
COL4A1P02462 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
COL4A1P02462 VMA21-202ENST00000370361 693 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A1P02462 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A1P02462 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.62■□□□□ 0.89
COL4A1P02462 TAF8-206ENST00000472818 719 ntTSL 2 BASIC20.62■□□□□ 0.89
COL4A1P02462 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC20.62■□□□□ 0.89
COL4A1P02462 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.62■□□□□ 0.89
COL4A1P02462 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A1P02462 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.62■□□□□ 0.89
COL4A1P02462 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A1P02462 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL4A1P02462 AP3S2-216ENST00000617003 1561 ntBASIC20.62■□□□□ 0.89
COL4A1P02462 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A1P02462 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A1P02462 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.62■□□□□ 0.89
COL4A1P02462 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL4A1P02462 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.62■□□□□ 0.89
COL4A1P02462 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 LINC02012-201ENST00000608206 1725 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
COL4A1P02462 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL4A1P02462 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.61■□□□□ 0.89
COL4A1P02462 SPDYE7P-202ENST00000420373 878 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A1P02462 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A1P02462 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC20.61■□□□□ 0.89
COL4A1P02462 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.61■□□□□ 0.89
COL4A1P02462 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.61■□□□□ 0.89
COL4A1P02462 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.61■□□□□ 0.89
COL4A1P02462 AL138828.2-201ENST00000615812 383 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A1P02462 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A1P02462 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 AL133373.2-201ENST00000623187 2828 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A1P02462 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
COL4A1P02462 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A1P02462 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.61■□□□□ 0.89
COL4A1P02462 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
COL4A1P02462 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL4A1P02462 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.61■□□□□ 0.89
COL4A1P02462 AC105233.2-201ENST00000523697 349 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 AP005018.1-201ENST00000525475 301 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 AF228730.5-201ENST00000530288 346 ntBASIC20.61■□□□□ 0.89
COL4A1P02462 RARRES2P9-201ENST00000565168 469 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms