Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 AL023875.1-201ENST00000640777 796 ntBASIC16.15■□□□□ 0.18
NR1H4Q96RI1 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.15■□□□□ 0.18
NR1H4Q96RI1 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
NR1H4Q96RI1 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 ID1-201ENST00000376105 1233 ntBASIC16.14■□□□□ 0.17
NR1H4Q96RI1 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 AL023284.2-201ENST00000405850 579 ntBASIC16.14■□□□□ 0.17
NR1H4Q96RI1 AC005104.2-201ENST00000427818 678 ntBASIC16.14■□□□□ 0.17
NR1H4Q96RI1 AC026366.1-201ENST00000488803 879 ntBASIC16.14■□□□□ 0.17
NR1H4Q96RI1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 AC233263.1-201ENST00000578059 224 ntBASIC16.14■□□□□ 0.17
NR1H4Q96RI1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 AC069544.1-201ENST00000609399 999 ntBASIC16.14■□□□□ 0.17
NR1H4Q96RI1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NR1H4Q96RI1 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 AL603832.2-201ENST00000566195 2125 ntBASIC16.13■□□□□ 0.17
NR1H4Q96RI1 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 KRASP1-201ENST00000407852 552 ntBASIC16.13■□□□□ 0.17
NR1H4Q96RI1 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC16.13■□□□□ 0.17
NR1H4Q96RI1 MTDHP1-201ENST00000605323 784 ntBASIC16.13■□□□□ 0.17
NR1H4Q96RI1 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms