Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
KRT39Q6A163 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 AC009053.2-201ENST00000563701 2365 ntBASIC18.46■□□□□ 0.55
KRT39Q6A163 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 RPS2P28-201ENST00000314255 741 ntBASIC18.46■□□□□ 0.55
KRT39Q6A163 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 TPM4P1-201ENST00000436100 807 ntBASIC18.46■□□□□ 0.55
KRT39Q6A163 PAWRP1-201ENST00000451083 565 ntBASIC18.46■□□□□ 0.55
KRT39Q6A163 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.46■□□□□ 0.55
KRT39Q6A163 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.46■□□□□ 0.55
KRT39Q6A163 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.46■□□□□ 0.55
KRT39Q6A163 DUX4L17-201ENST00000557360 1267 ntBASIC18.46■□□□□ 0.55
KRT39Q6A163 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.46■□□□□ 0.55
KRT39Q6A163 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.46■□□□□ 0.55
KRT39Q6A163 AC148477.8-201ENST00000624298 468 ntBASIC18.46■□□□□ 0.55
KRT39Q6A163 AL805961.1-202ENST00000641562 540 ntBASIC18.46■□□□□ 0.55
KRT39Q6A163 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.46■□□□□ 0.55
KRT39Q6A163 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.46■□□□□ 0.55
KRT39Q6A163 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
KRT39Q6A163 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
KRT39Q6A163 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
KRT39Q6A163 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.45■□□□□ 0.54
KRT39Q6A163 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
KRT39Q6A163 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.45■□□□□ 0.54
KRT39Q6A163 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.45■□□□□ 0.54
KRT39Q6A163 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.45■□□□□ 0.54
KRT39Q6A163 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.45■□□□□ 0.54
KRT39Q6A163 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 AC106886.4-201ENST00000623557 2502 ntBASIC18.45■□□□□ 0.54
KRT39Q6A163 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.45■□□□□ 0.54
KRT39Q6A163 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.45■□□□□ 0.54
KRT39Q6A163 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.45■□□□□ 0.54
KRT39Q6A163 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.45■□□□□ 0.54
KRT39Q6A163 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.45■□□□□ 0.54
KRT39Q6A163 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.45■□□□□ 0.54
KRT39Q6A163 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
KRT39Q6A163 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
KRT39Q6A163 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
KRT39Q6A163 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.45■□□□□ 0.54
KRT39Q6A163 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 TUBB8P12-201ENST00000308911 1335 ntBASIC18.45■□□□□ 0.54
KRT39Q6A163 TUBB7P-202ENST00000428444 1305 ntBASIC18.45■□□□□ 0.54
KRT39Q6A163 TUBB8P7-204ENST00000567960 1332 ntBASIC18.45■□□□□ 0.54
KRT39Q6A163 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
KRT39Q6A163 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
KRT39Q6A163 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.44■□□□□ 0.54
KRT39Q6A163 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 AC136632.2-201ENST00000512891 861 ntBASIC18.44■□□□□ 0.54
KRT39Q6A163 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.44■□□□□ 0.54
KRT39Q6A163 AL773604.1-201ENST00000617417 272 ntBASIC18.44■□□□□ 0.54
KRT39Q6A163 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.44■□□□□ 0.54
KRT39Q6A163 AF228730.7-201ENST00000641842 219 ntBASIC18.44■□□□□ 0.54
KRT39Q6A163 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms