Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 NKAPP1-205ENST00000585790 367 ntBASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
PTCHD3Q3KNS1 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 ACTG1P4-201ENST00000425123 1122 ntBASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 BX005266.1-201ENST00000473402 457 ntBASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 AC139887.3-201ENST00000568585 713 ntBASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 AL139288.1-201ENST00000623748 933 ntBASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
PTCHD3Q3KNS1 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 AC025062.2-201ENST00000605477 670 ntBASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PTCHD3Q3KNS1 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms