Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CX3CL1P78423 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
CX3CL1P78423 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC13.83□□□□□ -0.19
CX3CL1P78423 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CX3CL1P78423 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.83□□□□□ -0.19
CX3CL1P78423 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.83□□□□□ -0.2
CX3CL1P78423 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC13.83□□□□□ -0.2
CX3CL1P78423 AL732292.2-201ENST00000609649 430 ntBASIC13.83□□□□□ -0.2
CX3CL1P78423 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CX3CL1P78423 PCDHB19P-201ENST00000570871 2371 ntBASIC13.83□□□□□ -0.2
CX3CL1P78423 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CX3CL1P78423 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CL1P78423 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
CX3CL1P78423 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CL1P78423 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC009336.1-201ENST00000608941 1553 ntBASIC13.83□□□□□ -0.2
CX3CL1P78423 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CX3CL1P78423 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CL1P78423 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.82□□□□□ -0.2
CX3CL1P78423 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.82□□□□□ -0.2
CX3CL1P78423 IPPK-202ENST00000375522 882 ntTSL 3 BASIC13.82□□□□□ -0.2
CX3CL1P78423 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 SDHD-206ENST00000528182 754 ntTSL 3 BASIC13.82□□□□□ -0.2
CX3CL1P78423 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC13.82□□□□□ -0.2
CX3CL1P78423 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 AC012313.10-201ENST00000623509 926 ntBASIC13.82□□□□□ -0.2
CX3CL1P78423 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CX3CL1P78423 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
CX3CL1P78423 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC13.82□□□□□ -0.2
CX3CL1P78423 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CX3CL1P78423 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CX3CL1P78423 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.82□□□□□ -0.2
CX3CL1P78423 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CX3CL1P78423 AP005117.1-201ENST00000584346 1413 ntBASIC13.81□□□□□ -0.2
CX3CL1P78423 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms