Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VTA1Q9NP79 UXT-AS1-201ENST00000590504 1525 ntBASIC19.04■□□□□ 0.64
VTA1Q9NP79 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.04■□□□□ 0.64
VTA1Q9NP79 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VTA1Q9NP79 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
VTA1Q9NP79 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VTA1Q9NP79 AC020763.4-201ENST00000623414 4170 ntBASIC19.03■□□□□ 0.64
VTA1Q9NP79 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 TUBB3P1-201ENST00000405796 1332 ntBASIC19.03■□□□□ 0.64
VTA1Q9NP79 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 AL035633.1-201ENST00000406139 838 ntBASIC19.03■□□□□ 0.64
VTA1Q9NP79 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.03■□□□□ 0.64
VTA1Q9NP79 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VTA1Q9NP79 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 LETM1P2-201ENST00000597330 2178 ntBASIC19.02■□□□□ 0.64
VTA1Q9NP79 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 KLF2P3-201ENST00000451977 1087 ntBASIC19.02■□□□□ 0.64
VTA1Q9NP79 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 AJ011932.1-201ENST00000621707 465 ntBASIC19.02■□□□□ 0.64
VTA1Q9NP79 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 RAB34-224ENST00000636513 888 ntTSL 5 BASIC19.02■□□□□ 0.64
VTA1Q9NP79 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VTA1Q9NP79 AC008764.6-201ENST00000595909 2069 ntBASIC19.02■□□□□ 0.63
VTA1Q9NP79 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VTA1Q9NP79 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
VTA1Q9NP79 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
VTA1Q9NP79 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
VTA1Q9NP79 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.02■□□□□ 0.63
VTA1Q9NP79 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VTA1Q9NP79 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VTA1Q9NP79 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VTA1Q9NP79 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
VTA1Q9NP79 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 AC055876.3-201ENST00000431496 288 ntBASIC19.01■□□□□ 0.63
VTA1Q9NP79 SPDYE14P-201ENST00000442619 822 ntBASIC19.01■□□□□ 0.63
VTA1Q9NP79 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 AC093214.1-201ENST00000511688 1107 ntBASIC19.01■□□□□ 0.63
VTA1Q9NP79 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VTA1Q9NP79 AC026150.2-201ENST00000564693 1156 ntBASIC19.01■□□□□ 0.63
VTA1Q9NP79 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.01■□□□□ 0.63
VTA1Q9NP79 MPDU1-223ENST00000582151 728 ntBASIC19.01■□□□□ 0.63
VTA1Q9NP79 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VTA1Q9NP79 AC138649.4-201ENST00000612222 287 ntBASIC19.01■□□□□ 0.63
VTA1Q9NP79 AC008267.7-201ENST00000624570 1194 ntBASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms