Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 BX005266.1-201ENST00000473402 457 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 DUX4L17-201ENST00000557360 1267 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 NKAPP1-205ENST00000585790 367 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 AL732292.2-201ENST00000609649 430 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 AL589182.2-201ENST00000619332 1049 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 AL355877.3-201ENST00000622820 899 ntBASIC16.38■□□□□ 0.21
BRF2Q9HAW0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRF2Q9HAW0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 MTDHP3-201ENST00000594186 672 ntBASIC16.37■□□□□ 0.21
BRF2Q9HAW0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRF2Q9HAW0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 RNF216P1-203ENST00000404404 2427 ntBASIC16.36■□□□□ 0.21
BRF2Q9HAW0 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 AC091304.2-201ENST00000564639 760 ntBASIC16.36■□□□□ 0.21
BRF2Q9HAW0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 AL118508.1-201ENST00000613502 2345 ntBASIC16.36■□□□□ 0.21
BRF2Q9HAW0 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 PCDHB17P-201ENST00000539533 2393 ntBASIC16.36■□□□□ 0.21
BRF2Q9HAW0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.36■□□□□ 0.21
BRF2Q9HAW0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.36■□□□□ 0.21
BRF2Q9HAW0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms