Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.11■□□□□ 0.33
LDB1Q86U70 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LDB1Q86U70 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 UBALD1-205ENST00000590891 2641 ntBASIC17.11■□□□□ 0.33
LDB1Q86U70 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
LDB1Q86U70 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.11■□□□□ 0.33
LDB1Q86U70 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 RBM17P3-201ENST00000417687 1192 ntBASIC17.11■□□□□ 0.33
LDB1Q86U70 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.11■□□□□ 0.33
LDB1Q86U70 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LDB1Q86U70 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.11■□□□□ 0.33
LDB1Q86U70 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 AF238378.1-201ENST00000526806 358 ntBASIC17.11■□□□□ 0.33
LDB1Q86U70 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.11■□□□□ 0.33
LDB1Q86U70 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.11■□□□□ 0.33
LDB1Q86U70 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.11■□□□□ 0.33
LDB1Q86U70 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 REXO1L6P-202ENST00000619970 1078 ntBASIC17.11■□□□□ 0.33
LDB1Q86U70 AL355877.3-201ENST00000622820 899 ntBASIC17.11■□□□□ 0.33
LDB1Q86U70 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
LDB1Q86U70 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LDB1Q86U70 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LDB1Q86U70 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 OR6D1P-203ENST00000641209 4860 ntBASIC17.1■□□□□ 0.33
LDB1Q86U70 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB1Q86U70 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 ACTG1P4-201ENST00000425123 1122 ntBASIC17.1■□□□□ 0.33
LDB1Q86U70 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.1■□□□□ 0.33
LDB1Q86U70 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB1Q86U70 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB1Q86U70 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB1Q86U70 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.1■□□□□ 0.33
LDB1Q86U70 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.1■□□□□ 0.33
LDB1Q86U70 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.1■□□□□ 0.33
LDB1Q86U70 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 AC092171.3-201ENST00000610122 2651 ntBASIC17.1■□□□□ 0.33
LDB1Q86U70 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.1■□□□□ 0.33
LDB1Q86U70 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LDB1Q86U70 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LDB1Q86U70 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LDB1Q86U70 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB1Q86U70 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB1Q86U70 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB1Q86U70 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB1Q86U70 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LDB1Q86U70 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.09■□□□□ 0.33
LDB1Q86U70 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms