Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.98□□□□□ -0.17
LMO4P61968 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.98□□□□□ -0.17
LMO4P61968 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LMO4P61968 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC13.98□□□□□ -0.17
LMO4P61968 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.98□□□□□ -0.17
LMO4P61968 LINC00628-201ENST00000628516 1289 ntBASIC13.98□□□□□ -0.17
LMO4P61968 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
LMO4P61968 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.98□□□□□ -0.17
LMO4P61968 HTR7P1-202ENST00000624664 4411 ntBASIC13.98□□□□□ -0.17
LMO4P61968 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LMO4P61968 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
LMO4P61968 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC13.98□□□□□ -0.17
LMO4P61968 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LMO4P61968 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.98□□□□□ -0.17
LMO4P61968 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
LMO4P61968 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
LMO4P61968 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
LMO4P61968 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
LMO4P61968 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.97□□□□□ -0.17
LMO4P61968 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.97□□□□□ -0.17
LMO4P61968 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.97□□□□□ -0.17
LMO4P61968 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.97□□□□□ -0.17
LMO4P61968 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 AC087641.1-201ENST00000557561 1021 ntBASIC13.97□□□□□ -0.17
LMO4P61968 RPL28-205ENST00000558131 444 ntTSL 5 BASIC13.97□□□□□ -0.17
LMO4P61968 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC13.97□□□□□ -0.17
LMO4P61968 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LMO4P61968 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LMO4P61968 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 AL021920.2-201ENST00000624828 1351 ntBASIC13.96□□□□□ -0.17
LMO4P61968 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.96□□□□□ -0.17
LMO4P61968 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.96□□□□□ -0.17
LMO4P61968 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
LMO4P61968 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 HCG11-201ENST00000411553 5696 ntBASIC13.96□□□□□ -0.17
LMO4P61968 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.96□□□□□ -0.17
LMO4P61968 NOC2LP2-201ENST00000407594 1944 ntBASIC13.96□□□□□ -0.17
LMO4P61968 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 RNU1-129P-201ENST00000384064 167 ntBASIC13.96□□□□□ -0.17
LMO4P61968 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC13.96□□□□□ -0.17
LMO4P61968 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.96□□□□□ -0.17
LMO4P61968 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMO4P61968 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.96□□□□□ -0.17
LMO4P61968 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms