Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.15■□□□□ 0.18
RFX3P48380 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RFX3P48380 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX3P48380 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX3P48380 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.15■□□□□ 0.18
RFX3P48380 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RFX3P48380 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
RFX3P48380 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
RFX3P48380 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RFX3P48380 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
RFX3P48380 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RFX3P48380 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RFX3P48380 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
RFX3P48380 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.14■□□□□ 0.18
RFX3P48380 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.14■□□□□ 0.17
RFX3P48380 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.14■□□□□ 0.17
RFX3P48380 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 KRT16P4-201ENST00000453883 522 ntBASIC16.14■□□□□ 0.17
RFX3P48380 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.14■□□□□ 0.17
RFX3P48380 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 CLEC4GP1-201ENST00000596555 870 ntBASIC16.14■□□□□ 0.17
RFX3P48380 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 AL121772.3-201ENST00000610840 674 ntBASIC16.14■□□□□ 0.17
RFX3P48380 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.14■□□□□ 0.17
RFX3P48380 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.14■□□□□ 0.17
RFX3P48380 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
RFX3P48380 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RFX3P48380 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
RFX3P48380 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.14■□□□□ 0.17
RFX3P48380 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
RFX3P48380 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RFX3P48380 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.14■□□□□ 0.17
RFX3P48380 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
RFX3P48380 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.13■□□□□ 0.17
RFX3P48380 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.13■□□□□ 0.17
RFX3P48380 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 AC132938.5-201ENST00000624980 1813 ntBASIC16.13■□□□□ 0.17
RFX3P48380 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RFX3P48380 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.13■□□□□ 0.17
RFX3P48380 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX3P48380 NUS1P1-201ENST00000446295 882 ntBASIC16.13■□□□□ 0.17
RFX3P48380 AC132008.2-207ENST00000454517 770 ntBASIC16.13■□□□□ 0.17
RFX3P48380 AC091304.2-201ENST00000564639 760 ntBASIC16.13■□□□□ 0.17
RFX3P48380 STK25P1-201ENST00000585406 838 ntBASIC16.13■□□□□ 0.17
RFX3P48380 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.13■□□□□ 0.17
RFX3P48380 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RFX3P48380 AL353593.2-201ENST00000602529 1483 ntBASIC16.13■□□□□ 0.17
RFX3P48380 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
RFX3P48380 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.13■□□□□ 0.17
RFX3P48380 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.13■□□□□ 0.17
RFX3P48380 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RFX3P48380 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RFX3P48380 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
RFX3P48380 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.12■□□□□ 0.17
RFX3P48380 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX3P48380 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
RFX3P48380 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.12■□□□□ 0.17
RFX3P48380 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms