Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.07■□□□□ 0.48
RTN3O95197 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.07■□□□□ 0.48
RTN3O95197 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.07■□□□□ 0.48
RTN3O95197 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.07■□□□□ 0.48
RTN3O95197 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.07■□□□□ 0.48
RTN3O95197 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.07■□□□□ 0.48
RTN3O95197 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 AL138688.1-201ENST00000624851 1594 ntBASIC18.07■□□□□ 0.48
RTN3O95197 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
RTN3O95197 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.07■□□□□ 0.48
RTN3O95197 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.07■□□□□ 0.48
RTN3O95197 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.07■□□□□ 0.48
RTN3O95197 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
RTN3O95197 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
RTN3O95197 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RTN3O95197 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RTN3O95197 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
RTN3O95197 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
RTN3O95197 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RTN3O95197 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
RTN3O95197 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RTN3O95197 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RTN3O95197 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RTN3O95197 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RTN3O95197 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 RPP21-221ENST00000428040 594 ntTSL 2 BASIC18.06■□□□□ 0.48
RTN3O95197 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RTN3O95197 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.06■□□□□ 0.48
RTN3O95197 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.06■□□□□ 0.48
RTN3O95197 AC040169.1-201ENST00000565382 521 ntBASIC18.06■□□□□ 0.48
RTN3O95197 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RTN3O95197 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RTN3O95197 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
RTN3O95197 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.06■□□□□ 0.48
RTN3O95197 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RTN3O95197 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
RTN3O95197 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.05■□□□□ 0.48
RTN3O95197 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.05■□□□□ 0.48
RTN3O95197 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.05■□□□□ 0.48
RTN3O95197 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RTN3O95197 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.05■□□□□ 0.48
RTN3O95197 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.05■□□□□ 0.48
RTN3O95197 HCG4B-203ENST00000450128 991 ntBASIC18.05■□□□□ 0.48
RTN3O95197 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.05■□□□□ 0.48
RTN3O95197 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.05■□□□□ 0.48
RTN3O95197 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.05■□□□□ 0.48
RTN3O95197 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
RTN3O95197 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RTN3O95197 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms