Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.85□□□□□ -0.19
HMGB3O15347 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.85□□□□□ -0.19
HMGB3O15347 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 AC026691.1-201ENST00000602502 2017 ntBASIC13.85□□□□□ -0.19
HMGB3O15347 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HMGB3O15347 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC13.85□□□□□ -0.19
HMGB3O15347 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
HMGB3O15347 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC13.84□□□□□ -0.19
HMGB3O15347 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 ARHGAP35-206ENST00000614079 7696 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.84□□□□□ -0.19
HMGB3O15347 AP002414.2-201ENST00000591780 3365 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.84□□□□□ -0.19
HMGB3O15347 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC13.84□□□□□ -0.19
HMGB3O15347 PARL-206ENST00000435888 1098 ntTSL 5 BASIC13.84□□□□□ -0.19
HMGB3O15347 MFAP1P1-201ENST00000442257 1255 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 AC026366.1-201ENST00000488803 879 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 RNA5SP413-201ENST00000516373 109 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 AC009065.1-201ENST00000564055 1225 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC13.84□□□□□ -0.19
HMGB3O15347 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
HMGB3O15347 AC116407.2-201ENST00000613639 860 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.84□□□□□ -0.19
HMGB3O15347 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
HMGB3O15347 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.84□□□□□ -0.19
HMGB3O15347 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.84□□□□□ -0.19
HMGB3O15347 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HMGB3O15347 PEG13-201ENST00000631594 5667 ntBASIC13.84□□□□□ -0.19
HMGB3O15347 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.83□□□□□ -0.19
HMGB3O15347 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HMGB3O15347 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
HMGB3O15347 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC13.83□□□□□ -0.19
HMGB3O15347 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
HMGB3O15347 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
HMGB3O15347 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
HMGB3O15347 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.83□□□□□ -0.2
HMGB3O15347 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 AC116353.5-201ENST00000638148 1699 ntBASIC13.83□□□□□ -0.2
HMGB3O15347 AC126335.2-201ENST00000623362 4637 ntBASIC13.83□□□□□ -0.2
HMGB3O15347 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HMGB3O15347 ISG20-202ENST00000379224 540 ntTSL 3 BASIC13.83□□□□□ -0.2
HMGB3O15347 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC13.83□□□□□ -0.2
HMGB3O15347 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HMGB3O15347 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.83□□□□□ -0.2
HMGB3O15347 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HMGB3O15347 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms