Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 AL513480.1-201ENST00000451731 511 ntBASIC18.38■□□□□ 0.53
CNTN3Q9P232 AC074386.1-202ENST00000463561 864 ntBASIC18.38■□□□□ 0.53
CNTN3Q9P232 ALG1L5P-201ENST00000482043 771 ntBASIC18.38■□□□□ 0.53
CNTN3Q9P232 YBX1P5-201ENST00000509441 847 ntBASIC18.38■□□□□ 0.53
CNTN3Q9P232 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 C20orf181-201ENST00000623918 480 ntBASIC18.38■□□□□ 0.53
CNTN3Q9P232 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CNTN3Q9P232 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
CNTN3Q9P232 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 LINC02012-201ENST00000608206 1725 ntBASIC18.37■□□□□ 0.53
CNTN3Q9P232 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.37■□□□□ 0.53
CNTN3Q9P232 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.37■□□□□ 0.53
CNTN3Q9P232 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CNTN3Q9P232 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 AC005829.1-201ENST00000570002 483 ntBASIC18.36■□□□□ 0.53
CNTN3Q9P232 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CNTN3Q9P232 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.36■□□□□ 0.53
CNTN3Q9P232 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.35■□□□□ 0.53
CNTN3Q9P232 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.35■□□□□ 0.53
CNTN3Q9P232 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CNTN3Q9P232 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms