Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
AP3S2P59780 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
AP3S2P59780 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
AP3S2P59780 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC14.79□□□□□ -0.04
AP3S2P59780 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC14.79□□□□□ -0.04
AP3S2P59780 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC14.79□□□□□ -0.04
AP3S2P59780 PPP1R14BP3-201ENST00000509033 445 ntBASIC14.79□□□□□ -0.04
AP3S2P59780 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.79□□□□□ -0.04
AP3S2P59780 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 AC006538.1-201ENST00000567905 1585 ntBASIC14.79□□□□□ -0.04
AP3S2P59780 AC233263.1-201ENST00000578059 224 ntBASIC14.79□□□□□ -0.04
AP3S2P59780 TK1-204ENST00000590430 683 ntTSL 3 BASIC14.79□□□□□ -0.04
AP3S2P59780 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
AP3S2P59780 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC14.79□□□□□ -0.04
AP3S2P59780 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.78□□□□□ -0.04
AP3S2P59780 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
AP3S2P59780 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
AP3S2P59780 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
AP3S2P59780 GAS7-202ENST00000396115 929 ntTSL 5 BASIC14.78□□□□□ -0.04
AP3S2P59780 MESTP1-201ENST00000404287 994 ntBASIC14.78□□□□□ -0.04
AP3S2P59780 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC14.78□□□□□ -0.04
AP3S2P59780 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 AC002558.1-201ENST00000488906 803 ntBASIC14.78□□□□□ -0.04
AP3S2P59780 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC14.78□□□□□ -0.04
AP3S2P59780 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC14.78□□□□□ -0.04
AP3S2P59780 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC14.78□□□□□ -0.04
AP3S2P59780 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
AP3S2P59780 AL137784.2-201ENST00000607332 1000 ntBASIC14.78□□□□□ -0.04
AP3S2P59780 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
AP3S2P59780 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
AP3S2P59780 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
AP3S2P59780 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
AP3S2P59780 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.78□□□□□ -0.04
AP3S2P59780 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
AP3S2P59780 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
AP3S2P59780 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.77□□□□□ -0.04
AP3S2P59780 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
AP3S2P59780 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
AP3S2P59780 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
AP3S2P59780 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.77□□□□□ -0.04
AP3S2P59780 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
AP3S2P59780 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.77□□□□□ -0.04
AP3S2P59780 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
AP3S2P59780 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms