Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC24.25■■□□□ 1.47
CLTCL1P53675 AC108860.2-201ENST00000562760 2183 ntBASIC24.25■■□□□ 1.47
CLTCL1P53675 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC24.25■■□□□ 1.47
CLTCL1P53675 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 STARD13-205ENST00000439831 945 ntTSL 2 BASIC24.25■■□□□ 1.47
CLTCL1P53675 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC24.25■■□□□ 1.47
CLTCL1P53675 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
CLTCL1P53675 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC24.25■■□□□ 1.47
CLTCL1P53675 AC124947.2-201ENST00000547118 1133 ntBASIC24.25■■□□□ 1.47
CLTCL1P53675 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC24.25■■□□□ 1.47
CLTCL1P53675 RN7SL204P-201ENST00000582831 262 ntBASIC24.25■■□□□ 1.47
CLTCL1P53675 AC073389.1-201ENST00000595595 795 ntBASIC24.25■■□□□ 1.47
CLTCL1P53675 SPDYE12P-201ENST00000618416 771 ntBASIC24.25■■□□□ 1.47
CLTCL1P53675 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC24.25■■□□□ 1.47
CLTCL1P53675 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC24.25■■□□□ 1.47
CLTCL1P53675 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
CLTCL1P53675 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
CLTCL1P53675 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC24.24■■□□□ 1.47
CLTCL1P53675 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
CLTCL1P53675 SATB1-217ENST00000493952 626 ntTSL 3 BASIC24.24■■□□□ 1.47
CLTCL1P53675 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLTCL1P53675 POLD4-211ENST00000539074 714 ntTSL 3 BASIC24.24■■□□□ 1.47
CLTCL1P53675 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC24.24■■□□□ 1.47
CLTCL1P53675 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC24.24■■□□□ 1.47
CLTCL1P53675 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC24.24■■□□□ 1.47
CLTCL1P53675 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLTCL1P53675 SLC9A3P2-201ENST00000447821 2021 ntBASIC24.24■■□□□ 1.47
CLTCL1P53675 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC24.24■■□□□ 1.47
CLTCL1P53675 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC24.24■■□□□ 1.47
CLTCL1P53675 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLTCL1P53675 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLTCL1P53675 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC24.24■■□□□ 1.47
CLTCL1P53675 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC24.24■■□□□ 1.47
CLTCL1P53675 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC24.24■■□□□ 1.47
CLTCL1P53675 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLTCL1P53675 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CLTCL1P53675 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
CLTCL1P53675 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC24.23■■□□□ 1.47
CLTCL1P53675 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC24.23■■□□□ 1.47
CLTCL1P53675 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC24.23■■□□□ 1.47
CLTCL1P53675 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC24.23■■□□□ 1.47
CLTCL1P53675 TSSK5P-201ENST00000423978 907 ntBASIC24.23■■□□□ 1.47
CLTCL1P53675 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC24.23■■□□□ 1.47
CLTCL1P53675 BANF1P1-201ENST00000553684 263 ntBASIC24.23■■□□□ 1.47
CLTCL1P53675 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC24.23■■□□□ 1.47
CLTCL1P53675 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CLTCL1P53675 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
CLTCL1P53675 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
CLTCL1P53675 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC24.22■■□□□ 1.47
CLTCL1P53675 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC24.22■■□□□ 1.47
CLTCL1P53675 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC24.22■■□□□ 1.47
CLTCL1P53675 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC24.22■■□□□ 1.47
CLTCL1P53675 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC24.22■■□□□ 1.47
CLTCL1P53675 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
CLTCL1P53675 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
CLTCL1P53675 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC24.22■■□□□ 1.47
CLTCL1P53675 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
CLTCL1P53675 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CLTCL1P53675 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC24.21■■□□□ 1.47
CLTCL1P53675 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLTCL1P53675 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC24.21■■□□□ 1.47
CLTCL1P53675 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLTCL1P53675 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC24.21■■□□□ 1.47
CLTCL1P53675 PNKD-204ENST00000436005 978 ntTSL 5 BASIC24.21■■□□□ 1.47
CLTCL1P53675 FAM207CP-201ENST00000443486 507 ntBASIC24.21■■□□□ 1.47
CLTCL1P53675 AC004890.2-204ENST00000481968 304 ntBASIC24.21■■□□□ 1.47
CLTCL1P53675 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC24.21■■□□□ 1.47
CLTCL1P53675 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CLTCL1P53675 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC24.21■■□□□ 1.47
CLTCL1P53675 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC24.21■■□□□ 1.47
CLTCL1P53675 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC24.21■■□□□ 1.47
CLTCL1P53675 AL021920.2-201ENST00000624828 1351 ntBASIC24.21■■□□□ 1.47
CLTCL1P53675 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CLTCL1P53675 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC24.21■■□□□ 1.47
CLTCL1P53675 RHBDF1P1-201ENST00000427504 1941 ntBASIC24.21■■□□□ 1.47
CLTCL1P53675 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms