Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NKX2-1P43699 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
NKX2-1P43699 UNC93B2-201ENST00000285383 730 ntBASIC14.1□□□□□ -0.15
NKX2-1P43699 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.1□□□□□ -0.15
NKX2-1P43699 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX2-1P43699 AC008550.1-201ENST00000511500 884 ntBASIC14.1□□□□□ -0.15
NKX2-1P43699 PENK-204ENST00000518770 863 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX2-1P43699 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX2-1P43699 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX2-1P43699 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX2-1P43699 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
NKX2-1P43699 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC14.09□□□□□ -0.15
NKX2-1P43699 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.09□□□□□ -0.15
NKX2-1P43699 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.09□□□□□ -0.15
NKX2-1P43699 Z99916.2-201ENST00000604037 246 ntBASIC14.09□□□□□ -0.15
NKX2-1P43699 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 AC026471.5-201ENST00000615068 467 ntBASIC14.09□□□□□ -0.15
NKX2-1P43699 AL157888.1-201ENST00000631930 593 ntBASIC14.09□□□□□ -0.15
NKX2-1P43699 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX2-1P43699 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX2-1P43699 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
NKX2-1P43699 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.08□□□□□ -0.15
NKX2-1P43699 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX2-1P43699 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC14.08□□□□□ -0.15
NKX2-1P43699 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX2-1P43699 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX2-1P43699 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.08□□□□□ -0.15
NKX2-1P43699 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX2-1P43699 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
NKX2-1P43699 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms