Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.26■□□□□ 0.67
CIITAP33076 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.26■□□□□ 0.67
CIITAP33076 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.26■□□□□ 0.67
CIITAP33076 AQP6-205ENST00000618286 829 ntTSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 TOP3BP1-201ENST00000420768 1380 ntBASIC19.26■□□□□ 0.67
CIITAP33076 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CIITAP33076 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CIITAP33076 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CIITAP33076 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.25■□□□□ 0.67
CIITAP33076 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC19.25■□□□□ 0.67
CIITAP33076 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.25■□□□□ 0.67
CIITAP33076 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.25■□□□□ 0.67
CIITAP33076 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CIITAP33076 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.25■□□□□ 0.67
CIITAP33076 AC040169.1-201ENST00000565382 521 ntBASIC19.25■□□□□ 0.67
CIITAP33076 AC018845.2-201ENST00000568326 409 ntBASIC19.25■□□□□ 0.67
CIITAP33076 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.25■□□□□ 0.67
CIITAP33076 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.25■□□□□ 0.67
CIITAP33076 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CIITAP33076 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.25■□□□□ 0.67
CIITAP33076 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC19.25■□□□□ 0.67
CIITAP33076 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.25■□□□□ 0.67
CIITAP33076 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.25■□□□□ 0.67
CIITAP33076 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CIITAP33076 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CIITAP33076 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.24■□□□□ 0.67
CIITAP33076 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.24■□□□□ 0.67
CIITAP33076 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.24■□□□□ 0.67
CIITAP33076 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.24■□□□□ 0.67
CIITAP33076 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.24■□□□□ 0.67
CIITAP33076 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.24■□□□□ 0.67
CIITAP33076 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.24■□□□□ 0.67
CIITAP33076 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.24■□□□□ 0.67
CIITAP33076 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.24■□□□□ 0.67
CIITAP33076 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.24■□□□□ 0.67
CIITAP33076 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.24■□□□□ 0.67
CIITAP33076 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
CIITAP33076 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC19.24■□□□□ 0.67
CIITAP33076 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 KRT8P49-201ENST00000604166 1432 ntBASIC19.24■□□□□ 0.67
CIITAP33076 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.24■□□□□ 0.67
CIITAP33076 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CIITAP33076 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.24■□□□□ 0.67
CIITAP33076 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.23■□□□□ 0.67
CIITAP33076 AP001094.4-201ENST00000579008 2176 ntBASIC19.23■□□□□ 0.67
CIITAP33076 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.23■□□□□ 0.67
CIITAP33076 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.23■□□□□ 0.67
CIITAP33076 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.23■□□□□ 0.67
CIITAP33076 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms