Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 ID1-201ENST00000376105 1233 ntBASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 MIR1238-201ENST00000408483 83 ntBASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 AC128688.1-201ENST00000487626 519 ntBASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 AC034232.1-201ENST00000506026 1064 ntBASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
TCRBV3S1A0A5B6 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 UBE2SP1-201ENST00000450587 669 ntBASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 HLA-J-202ENST00000469281 1241 ntBASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 AL135999.2-201ENST00000622438 1686 ntBASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
TCRBV3S1A0A5B6 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 AL603832.2-201ENST00000566195 2125 ntBASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 AL049757.1-201ENST00000616842 1596 ntBASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.06■□□□□ 0.16
TCRBV3S1A0A5B6 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms