Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.22■□□□□ 0.83
BRF1Q92994 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
BRF1Q92994 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
BRF1Q92994 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
BRF1Q92994 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
BRF1Q92994 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 DUSP5P1-201ENST00000441325 1139 ntBASIC20.22■□□□□ 0.83
BRF1Q92994 SAPCD2P3-201ENST00000455031 850 ntBASIC20.22■□□□□ 0.83
BRF1Q92994 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
BRF1Q92994 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.22■□□□□ 0.83
BRF1Q92994 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.22■□□□□ 0.83
BRF1Q92994 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
BRF1Q92994 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BRF1Q92994 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.22■□□□□ 0.83
BRF1Q92994 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
BRF1Q92994 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
BRF1Q92994 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.21■□□□□ 0.83
BRF1Q92994 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.21■□□□□ 0.83
BRF1Q92994 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.21■□□□□ 0.83
BRF1Q92994 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.21■□□□□ 0.83
BRF1Q92994 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.21■□□□□ 0.83
BRF1Q92994 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.21■□□□□ 0.83
BRF1Q92994 LINC01711-201ENST00000598340 967 ntBASIC20.21■□□□□ 0.83
BRF1Q92994 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
BRF1Q92994 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.21■□□□□ 0.83
BRF1Q92994 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
BRF1Q92994 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.21■□□□□ 0.83
BRF1Q92994 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.21■□□□□ 0.83
BRF1Q92994 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.21■□□□□ 0.83
BRF1Q92994 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
BRF1Q92994 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
BRF1Q92994 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BRF1Q92994 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
BRF1Q92994 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.83
BRF1Q92994 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.2■□□□□ 0.82
BRF1Q92994 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.2■□□□□ 0.82
BRF1Q92994 AGGF1P2-201ENST00000426656 2106 ntBASIC20.2■□□□□ 0.82
BRF1Q92994 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.2■□□□□ 0.82
BRF1Q92994 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.2■□□□□ 0.82
BRF1Q92994 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
BRF1Q92994 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.2■□□□□ 0.82
BRF1Q92994 AL353135.1-201ENST00000606729 504 ntBASIC20.2■□□□□ 0.82
BRF1Q92994 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
BRF1Q92994 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
BRF1Q92994 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.2■□□□□ 0.82
BRF1Q92994 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRF1Q92994 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.19■□□□□ 0.82
BRF1Q92994 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.19■□□□□ 0.82
BRF1Q92994 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.19■□□□□ 0.82
BRF1Q92994 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
BRF1Q92994 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
BRF1Q92994 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.19■□□□□ 0.82
BRF1Q92994 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
BRF1Q92994 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
BRF1Q92994 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.19■□□□□ 0.82
BRF1Q92994 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.19■□□□□ 0.82
BRF1Q92994 MTDHP4-201ENST00000600287 670 ntBASIC20.19■□□□□ 0.82
BRF1Q92994 RNF216P1-203ENST00000404404 2427 ntBASIC20.19■□□□□ 0.82
BRF1Q92994 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.19■□□□□ 0.82
BRF1Q92994 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
BRF1Q92994 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRF1Q92994 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms