Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 COA5-202ENST00000409997 557 ntTSL 4 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC5.34□□□□□ -1.56
SYNE1Q8NF91 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC067852.2-201ENST00000590513 2313 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC004967.1-201ENST00000453589 447 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 RPL28-205ENST00000558131 444 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AL513190.1-201ENST00000621254 727 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ATP6V0CP3-201ENST00000417255 467 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 MCCD1P2-201ENST00000423228 335 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 YBX1P5-201ENST00000509441 847 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 WAC-202ENST00000347934 2839 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC106028.4-201ENST00000614509 607 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 DHDH-204ENST00000523250 634 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 FAM197Y3-203ENST00000618346 717 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 HCG4B-203ENST00000450128 991 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 AC079781.4-201ENST00000641908 219 ntBASIC5.33□□□□□ -1.56
SYNE1Q8NF91 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SYNE1Q8NF91 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms