Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX1O00570 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SOX1O00570 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SOX1O00570 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.09■□□□□ 0.49
SOX1O00570 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 PHGDH-209ENST00000641074 1780 ntBASIC18.09■□□□□ 0.49
SOX1O00570 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 AL035456.1-201ENST00000456064 1369 ntBASIC18.09■□□□□ 0.49
SOX1O00570 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SOX1O00570 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC18.09■□□□□ 0.49
SOX1O00570 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SOX1O00570 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SOX1O00570 GPAA1P2-201ENST00000417923 928 ntBASIC18.09■□□□□ 0.49
SOX1O00570 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC18.09■□□□□ 0.49
SOX1O00570 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.09■□□□□ 0.49
SOX1O00570 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
SOX1O00570 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.09■□□□□ 0.49
SOX1O00570 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC18.09■□□□□ 0.49
SOX1O00570 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SOX1O00570 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.09■□□□□ 0.49
SOX1O00570 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.09■□□□□ 0.49
SOX1O00570 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SOX1O00570 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.09■□□□□ 0.49
SOX1O00570 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SOX1O00570 AL135999.2-201ENST00000622438 1686 ntBASIC18.09■□□□□ 0.49
SOX1O00570 AC138932.1-201ENST00000534164 6830 ntBASIC18.09■□□□□ 0.49
SOX1O00570 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.08■□□□□ 0.49
SOX1O00570 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
SOX1O00570 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
SOX1O00570 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.08■□□□□ 0.49
SOX1O00570 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SOX1O00570 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SOX1O00570 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SOX1O00570 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX1O00570 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX1O00570 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.08■□□□□ 0.48
SOX1O00570 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.08■□□□□ 0.48
SOX1O00570 AC099336.1-201ENST00000417053 1171 ntBASIC18.08■□□□□ 0.48
SOX1O00570 AC098850.1-201ENST00000419919 790 ntBASIC18.08■□□□□ 0.48
SOX1O00570 CTBP2P5-201ENST00000454986 1264 ntBASIC18.08■□□□□ 0.48
SOX1O00570 AC055876.2-201ENST00000531834 546 ntBASIC18.08■□□□□ 0.48
SOX1O00570 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.08■□□□□ 0.48
SOX1O00570 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.08■□□□□ 0.48
SOX1O00570 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
SOX1O00570 AC005412.3-201ENST00000580309 715 ntBASIC18.08■□□□□ 0.48
SOX1O00570 AC243960.2-201ENST00000600996 747 ntBASIC18.08■□□□□ 0.48
SOX1O00570 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.08■□□□□ 0.48
SOX1O00570 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
SOX1O00570 AL021578.1-201ENST00000613646 709 ntBASIC18.08■□□□□ 0.48
SOX1O00570 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.08■□□□□ 0.48
SOX1O00570 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SOX1O00570 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SOX1O00570 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.08■□□□□ 0.48
SOX1O00570 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
SOX1O00570 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.08■□□□□ 0.48
SOX1O00570 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SOX1O00570 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SOX1O00570 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SOX1O00570 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.07■□□□□ 0.48
SOX1O00570 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.07■□□□□ 0.48
SOX1O00570 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.07■□□□□ 0.48
SOX1O00570 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
SOX1O00570 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 FXNP2-201ENST00000411625 547 ntBASIC18.07■□□□□ 0.48
SOX1O00570 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.07■□□□□ 0.48
SOX1O00570 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC18.07■□□□□ 0.48
SOX1O00570 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX1O00570 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.07■□□□□ 0.48
SOX1O00570 ZNF890P-202ENST00000530367 1156 ntBASIC18.07■□□□□ 0.48
SOX1O00570 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 AC079328.1-201ENST00000560358 952 ntBASIC18.07■□□□□ 0.48
SOX1O00570 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.07■□□□□ 0.48
SOX1O00570 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.07■□□□□ 0.48
SOX1O00570 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC18.07■□□□□ 0.48
SOX1O00570 AC106872.11-201ENST00000605838 421 ntBASIC18.07■□□□□ 0.48
SOX1O00570 U62317.3-201ENST00000608319 855 ntBASIC18.07■□□□□ 0.48
SOX1O00570 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SOX1O00570 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms