Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC188H7C350 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC188H7C350 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC188H7C350 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.9■□□□□ 0.46
CCDC188H7C350 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC188H7C350 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
CCDC188H7C350 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.9■□□□□ 0.46
CCDC188H7C350 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CCDC188H7C350 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC188H7C350 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC188H7C350 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC188H7C350 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
CCDC188H7C350 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.9■□□□□ 0.46
CCDC188H7C350 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC188H7C350 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC188H7C350 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC188H7C350 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.9■□□□□ 0.46
CCDC188H7C350 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC188H7C350 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.89■□□□□ 0.46
CCDC188H7C350 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC188H7C350 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
CCDC188H7C350 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.89■□□□□ 0.46
CCDC188H7C350 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 SLC25A3P1-201ENST00000443844 931 ntBASIC17.89■□□□□ 0.45
CCDC188H7C350 AL359075.1-203ENST00000462729 1002 ntBASIC17.89■□□□□ 0.45
CCDC188H7C350 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CCDC188H7C350 AC145285.6-201ENST00000604632 637 ntBASIC17.89■□□□□ 0.45
CCDC188H7C350 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CCDC188H7C350 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 AC007950.2-201ENST00000615045 2347 ntBASIC17.89■□□□□ 0.45
CCDC188H7C350 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC188H7C350 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC188H7C350 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.89■□□□□ 0.45
CCDC188H7C350 AC125634.1-201ENST00000438758 1403 ntBASIC17.89■□□□□ 0.45
CCDC188H7C350 KRT8P10-201ENST00000450021 1447 ntBASIC17.89■□□□□ 0.45
CCDC188H7C350 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.89■□□□□ 0.45
CCDC188H7C350 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CCDC188H7C350 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CCDC188H7C350 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.89■□□□□ 0.45
CCDC188H7C350 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CCDC188H7C350 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
CCDC188H7C350 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
CCDC188H7C350 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CCDC188H7C350 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC17.88■□□□□ 0.45
CCDC188H7C350 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CCDC188H7C350 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC188H7C350 HBZP1-201ENST00000354915 429 ntBASIC17.88■□□□□ 0.45
CCDC188H7C350 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC188H7C350 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC188H7C350 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.88■□□□□ 0.45
CCDC188H7C350 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC188H7C350 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC188H7C350 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC188H7C350 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CCDC188H7C350 AL391256.1-201ENST00000443260 1855 ntBASIC17.88■□□□□ 0.45
CCDC188H7C350 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.88■□□□□ 0.45
CCDC188H7C350 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.88■□□□□ 0.45
CCDC188H7C350 AL353593.2-201ENST00000602529 1483 ntBASIC17.88■□□□□ 0.45
CCDC188H7C350 AC008894.3-201ENST00000624324 3103 ntBASIC17.87■□□□□ 0.45
CCDC188H7C350 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC188H7C350 AL645728.1-201ENST00000366221 2101 ntBASIC17.87■□□□□ 0.45
CCDC188H7C350 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC188H7C350 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC188H7C350 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC188H7C350 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC188H7C350 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC188H7C350 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CCDC188H7C350 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC188H7C350 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CCDC188H7C350 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC188H7C350 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.87■□□□□ 0.45
CCDC188H7C350 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.87■□□□□ 0.45
CCDC188H7C350 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CCDC188H7C350 LIN28AP1-201ENST00000429574 405 ntBASIC17.87■□□□□ 0.45
CCDC188H7C350 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.87■□□□□ 0.45
CCDC188H7C350 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms