Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 POM121L3P-201ENST00000419331 1163 ntBASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LIMCH1Q9UPQ0 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 AC092171.3-201ENST00000610122 2651 ntBASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
LIMCH1Q9UPQ0 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 AL020989.1-201ENST00000422979 469 ntBASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 SIGLEC30P-201ENST00000455569 941 ntBASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 AC074051.2-201ENST00000565115 352 ntBASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 PCDHB17P-201ENST00000539533 2393 ntBASIC20.26■□□□□ 0.83
LIMCH1Q9UPQ0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SPDYE21P-201ENST00000413323 827 ntBASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 NUS1P1-201ENST00000446295 882 ntBASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 AC092329.2-201ENST00000598402 547 ntBASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 NPAP1P7-201ENST00000613027 823 ntBASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 AP000550.4-202ENST00000639755 178 ntBASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 AL603756.1-201ENST00000606511 2163 ntBASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMCH1Q9UPQ0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms