Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HMGCS1Q01581 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.62■□□□□ 0.25
HMGCS1Q01581 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
HMGCS1Q01581 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGCS1Q01581 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HMGCS1Q01581 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 CROCCP1-201ENST00000426910 5675 ntBASIC16.61■□□□□ 0.25
HMGCS1Q01581 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 INTS4P1-201ENST00000438455 1935 ntBASIC16.61■□□□□ 0.25
HMGCS1Q01581 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 AC003669.1-201ENST00000334569 611 ntBASIC16.61■□□□□ 0.25
HMGCS1Q01581 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 RCN1P2-201ENST00000398357 915 ntBASIC16.61■□□□□ 0.25
HMGCS1Q01581 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGCS1Q01581 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGCS1Q01581 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 IGHV3-47-201ENST00000425060 335 ntBASIC16.6■□□□□ 0.25
HMGCS1Q01581 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGCS1Q01581 TNRC18P3-201ENST00000441896 2691 ntBASIC16.6■□□□□ 0.25
HMGCS1Q01581 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGCS1Q01581 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGCS1Q01581 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGCS1Q01581 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGCS1Q01581 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HMGCS1Q01581 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 AC074051.2-201ENST00000565115 352 ntBASIC16.59■□□□□ 0.25
HMGCS1Q01581 MIR3180-1-201ENST00000580374 94 ntBASIC16.59■□□□□ 0.25
HMGCS1Q01581 MIR3180-3-201ENST00000584616 94 ntBASIC16.59■□□□□ 0.25
HMGCS1Q01581 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGCS1Q01581 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
HMGCS1Q01581 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGCS1Q01581 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms