Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
HOXC11O43248 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
HOXC11O43248 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
HOXC11O43248 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC11O43248 HMGN1P19-201ENST00000436976 333 ntBASIC17.45■□□□□ 0.38
HOXC11O43248 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXC11O43248 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC11O43248 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC11O43248 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.45■□□□□ 0.38
HOXC11O43248 MIR4515-201ENST00000584082 81 ntBASIC17.45■□□□□ 0.38
HOXC11O43248 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC11O43248 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC11O43248 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.45■□□□□ 0.38
HOXC11O43248 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC11O43248 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC11O43248 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC11O43248 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC11O43248 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC11O43248 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXC11O43248 RFPL4AP1-201ENST00000530883 850 ntBASIC17.44■□□□□ 0.38
HOXC11O43248 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXC11O43248 AC005412.3-201ENST00000580309 715 ntBASIC17.44■□□□□ 0.38
HOXC11O43248 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HOXC11O43248 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXC11O43248 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXC11O43248 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXC11O43248 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
HOXC11O43248 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HOXC11O43248 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 EGFEM1P-202ENST00000431685 1563 ntBASIC17.44■□□□□ 0.38
HOXC11O43248 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC11O43248 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXC11O43248 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXC11O43248 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.43■□□□□ 0.38
HOXC11O43248 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.43■□□□□ 0.38
HOXC11O43248 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 AC012313.1-201ENST00000593393 3059 ntBASIC17.43■□□□□ 0.38
HOXC11O43248 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HOXC11O43248 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HOXC11O43248 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 AC004461.1-201ENST00000412461 403 ntBASIC17.43■□□□□ 0.38
HOXC11O43248 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.43■□□□□ 0.38
HOXC11O43248 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.43■□□□□ 0.38
HOXC11O43248 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.43■□□□□ 0.38
HOXC11O43248 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HOXC11O43248 AC022145.2-201ENST00000598203 171 ntBASIC17.43■□□□□ 0.38
HOXC11O43248 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.43■□□□□ 0.38
HOXC11O43248 AC016396.2-201ENST00000562575 1417 ntBASIC17.43■□□□□ 0.38
HOXC11O43248 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HOXC11O43248 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXC11O43248 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HOXC11O43248 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HOXC11O43248 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HOXC11O43248 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
HOXC11O43248 AL355306.1-201ENST00000415580 579 ntBASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms