Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
NR1H4Q96RI1 LINC01124-201ENST00000409786 2117 ntBASIC22.7■■□□□ 1.22
NR1H4Q96RI1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NR1H4Q96RI1 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
NR1H4Q96RI1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
NR1H4Q96RI1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
NR1H4Q96RI1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC22.67■■□□□ 1.22
NR1H4Q96RI1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC22.66■■□□□ 1.22
NR1H4Q96RI1 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NR1H4Q96RI1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NR1H4Q96RI1 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NR1H4Q96RI1 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 AC142472.1-201ENST00000612013 1741 ntBASIC22.65■■□□□ 1.22
NR1H4Q96RI1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC22.65■■□□□ 1.22
NR1H4Q96RI1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
NR1H4Q96RI1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NR1H4Q96RI1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC22.64■■□□□ 1.22
NR1H4Q96RI1 AC096887.2-201ENST00000623443 1957 ntBASIC22.64■■□□□ 1.21
NR1H4Q96RI1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC22.64■■□□□ 1.21
NR1H4Q96RI1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC22.64■■□□□ 1.21
NR1H4Q96RI1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
NR1H4Q96RI1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
NR1H4Q96RI1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NR1H4Q96RI1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
NR1H4Q96RI1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NR1H4Q96RI1 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NR1H4Q96RI1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
NR1H4Q96RI1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC22.61■■□□□ 1.21
NR1H4Q96RI1 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.61■■□□□ 1.21
NR1H4Q96RI1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NR1H4Q96RI1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NR1H4Q96RI1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC22.6■■□□□ 1.21
NR1H4Q96RI1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
NR1H4Q96RI1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC22.6■■□□□ 1.21
NR1H4Q96RI1 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NR1H4Q96RI1 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NR1H4Q96RI1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NR1H4Q96RI1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NR1H4Q96RI1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NR1H4Q96RI1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
NR1H4Q96RI1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.58■■□□□ 1.21
NR1H4Q96RI1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.58■■□□□ 1.2
NR1H4Q96RI1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC22.57■■□□□ 1.2
NR1H4Q96RI1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NR1H4Q96RI1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
NR1H4Q96RI1 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 178.5 ms