Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.35■■■□□ 2.29
SMC1BQ8NDV3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
SMC1BQ8NDV3 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC29.34■■■□□ 2.29
SMC1BQ8NDV3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
SMC1BQ8NDV3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC29.34■■■□□ 2.29
SMC1BQ8NDV3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
SMC1BQ8NDV3 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
SMC1BQ8NDV3 AL356740.2-201ENST00000601559 647 ntBASIC29.33■■■□□ 2.29
SMC1BQ8NDV3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.33■■■□□ 2.29
SMC1BQ8NDV3 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
SMC1BQ8NDV3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
SMC1BQ8NDV3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
SMC1BQ8NDV3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
SMC1BQ8NDV3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC29.3■■■□□ 2.28
SMC1BQ8NDV3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC29.3■■■□□ 2.28
SMC1BQ8NDV3 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC29.3■■■□□ 2.28
SMC1BQ8NDV3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC29.3■■■□□ 2.28
SMC1BQ8NDV3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
SMC1BQ8NDV3 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
SMC1BQ8NDV3 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SMC1BQ8NDV3 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SMC1BQ8NDV3 MIR6724-1-201ENST00000616420 92 ntBASIC29.29■■■□□ 2.28
SMC1BQ8NDV3 MIR6724-2-201ENST00000616483 92 ntBASIC29.29■■■□□ 2.28
SMC1BQ8NDV3 MIR6724-4-201ENST00000617390 92 ntBASIC29.29■■■□□ 2.28
SMC1BQ8NDV3 MIR6724-3-201ENST00000622482 92 ntBASIC29.29■■■□□ 2.28
SMC1BQ8NDV3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
SMC1BQ8NDV3 AL359504.2-201ENST00000605506 1601 ntBASIC29.28■■■□□ 2.28
SMC1BQ8NDV3 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.28■■■□□ 2.28
SMC1BQ8NDV3 AC010997.5-201ENST00000609182 354 ntBASIC29.28■■■□□ 2.28
SMC1BQ8NDV3 AC106739.1-201ENST00000617035 715 ntBASIC29.28■■■□□ 2.28
SMC1BQ8NDV3 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
SMC1BQ8NDV3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC29.28■■■□□ 2.28
SMC1BQ8NDV3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
SMC1BQ8NDV3 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
SMC1BQ8NDV3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC29.27■■■□□ 2.28
SMC1BQ8NDV3 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
SMC1BQ8NDV3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC29.27■■■□□ 2.28
SMC1BQ8NDV3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC29.27■■■□□ 2.28
SMC1BQ8NDV3 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SMC1BQ8NDV3 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SMC1BQ8NDV3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SMC1BQ8NDV3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.25■■■□□ 2.27
SMC1BQ8NDV3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
SMC1BQ8NDV3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.25■■■□□ 2.27
SMC1BQ8NDV3 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC29.24■■■□□ 2.27
SMC1BQ8NDV3 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SMC1BQ8NDV3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SMC1BQ8NDV3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SMC1BQ8NDV3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SMC1BQ8NDV3 PBX2P1-201ENST00000493219 1291 ntBASIC29.24■■■□□ 2.27
SMC1BQ8NDV3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SMC1BQ8NDV3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SMC1BQ8NDV3 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SMC1BQ8NDV3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.21■■■□□ 2.27
SMC1BQ8NDV3 ANKRD20A6P-201ENST00000618763 204 ntBASIC29.21■■■□□ 2.27
SMC1BQ8NDV3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.27
SMC1BQ8NDV3 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
SMC1BQ8NDV3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SMC1BQ8NDV3 AP004833.2-201ENST00000532228 1454 ntBASIC29.2■■■□□ 2.26
SMC1BQ8NDV3 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
SMC1BQ8NDV3 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SMC1BQ8NDV3 AC100797.4-201ENST00000631653 1827 ntBASIC29.19■■■□□ 2.26
SMC1BQ8NDV3 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SMC1BQ8NDV3 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SMC1BQ8NDV3 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
SMC1BQ8NDV3 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC29.18■■■□□ 2.26
SMC1BQ8NDV3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SMC1BQ8NDV3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SMC1BQ8NDV3 AC120024.1-201ENST00000562672 995 ntBASIC29.17■■■□□ 2.26
SMC1BQ8NDV3 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
SMC1BQ8NDV3 MTDHP2-201ENST00000601468 714 ntBASIC29.17■■■□□ 2.26
SMC1BQ8NDV3 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC29.17■■■□□ 2.26
SMC1BQ8NDV3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC29.16■■■□□ 2.26
SMC1BQ8NDV3 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.16■■■□□ 2.26
SMC1BQ8NDV3 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SMC1BQ8NDV3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.16■■■□□ 2.26
SMC1BQ8NDV3 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SMC1BQ8NDV3 AL512631.2-201ENST00000604634 923 ntBASIC29.16■■■□□ 2.26
SMC1BQ8NDV3 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC29.15■■■□□ 2.26
SMC1BQ8NDV3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
SMC1BQ8NDV3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SMC1BQ8NDV3 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SMC1BQ8NDV3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.15■■■□□ 2.26
SMC1BQ8NDV3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC29.15■■■□□ 2.26
SMC1BQ8NDV3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.14■■■□□ 2.26
SMC1BQ8NDV3 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC29.14■■■□□ 2.26
SMC1BQ8NDV3 GLI3-203ENST00000437480 451 ntTSL 2 BASIC29.14■■■□□ 2.26
SMC1BQ8NDV3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.14■■■□□ 2.26
SMC1BQ8NDV3 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC29.14■■■□□ 2.26
SMC1BQ8NDV3 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
SMC1BQ8NDV3 SUDS3P1-201ENST00000505831 966 ntBASIC29.13■■■□□ 2.25
SMC1BQ8NDV3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.13■■■□□ 2.25
SMC1BQ8NDV3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC29.12■■■□□ 2.25
SMC1BQ8NDV3 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC29.11■■■□□ 2.25
SMC1BQ8NDV3 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SMC1BQ8NDV3 AK3-203ENST00000447596 705 ntTSL 2 BASIC29.1■■■□□ 2.25
SMC1BQ8NDV3 AL031432.3-201ENST00000607698 485 ntBASIC29.1■■■□□ 2.25
SMC1BQ8NDV3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SMC1BQ8NDV3 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC29.1■■■□□ 2.25
SMC1BQ8NDV3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms