Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
LRRC28Q86X40 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LRRC28Q86X40 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRRC28Q86X40 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRRC28Q86X40 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LRRC28Q86X40 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRRC28Q86X40 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LRRC28Q86X40 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC28Q86X40 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.34■■□□□ 1.01
LRRC28Q86X40 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC28Q86X40 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC28Q86X40 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC28Q86X40 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC28Q86X40 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRRC28Q86X40 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
LRRC28Q86X40 AC008813.1-201ENST00000536597 885 ntBASIC21.33■■□□□ 1.01
LRRC28Q86X40 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.33■■□□□ 1
LRRC28Q86X40 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
LRRC28Q86X40 AC142472.1-201ENST00000612013 1741 ntBASIC21.32■■□□□ 1
LRRC28Q86X40 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRRC28Q86X40 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.32■■□□□ 1
LRRC28Q86X40 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC28Q86X40 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC28Q86X40 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.32■■□□□ 1
LRRC28Q86X40 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC28Q86X40 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC28Q86X40 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.32■■□□□ 1
LRRC28Q86X40 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.32■■□□□ 1
LRRC28Q86X40 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.32■■□□□ 1
LRRC28Q86X40 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC28Q86X40 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC28Q86X40 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
LRRC28Q86X40 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC28Q86X40 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.31■■□□□ 1
LRRC28Q86X40 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.31■■□□□ 1
LRRC28Q86X40 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC28Q86X40 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.31■■□□□ 1
LRRC28Q86X40 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.3■■□□□ 1
LRRC28Q86X40 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC28Q86X40 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.3■■□□□ 1
LRRC28Q86X40 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
LRRC28Q86X40 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC28Q86X40 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC28Q86X40 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.3■■□□□ 1
LRRC28Q86X40 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.3■■□□□ 1
LRRC28Q86X40 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC28Q86X40 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC28Q86X40 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC28Q86X40 AL139125.2-201ENST00000623134 1869 ntBASIC21.29■■□□□ 1
LRRC28Q86X40 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC28Q86X40 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LRRC28Q86X40 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.29■■□□□ 1
LRRC28Q86X40 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC28Q86X40 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRC28Q86X40 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC28Q86X40 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC28Q86X40 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LRRC28Q86X40 PEX7-203ENST00000541292 945 ntTSL 5 BASIC21.28■■□□□ 1
LRRC28Q86X40 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.28■■□□□ 1
LRRC28Q86X40 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.27■■□□□ 1
LRRC28Q86X40 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
LRRC28Q86X40 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC28Q86X40 AC010501.1-201ENST00000606270 1962 ntBASIC21.27■■□□□ 1
LRRC28Q86X40 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LRRC28Q86X40 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC28Q86X40 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC28Q86X40 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.26■□□□□ 0.99
LRRC28Q86X40 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LRRC28Q86X40 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.26■□□□□ 0.99
LRRC28Q86X40 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
LRRC28Q86X40 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
LRRC28Q86X40 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
LRRC28Q86X40 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRC28Q86X40 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LRRC28Q86X40 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LRRC28Q86X40 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC28Q86X40 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC28Q86X40 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC28Q86X40 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC28Q86X40 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LRRC28Q86X40 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC28Q86X40 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
LRRC28Q86X40 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LRRC28Q86X40 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.23■□□□□ 0.99
LRRC28Q86X40 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms