Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.54■■□□□ 1.84
CCDC40Q4G0X9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.54■■□□□ 1.84
CCDC40Q4G0X9 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC40Q4G0X9 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC40Q4G0X9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
CCDC40Q4G0X9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.54■■□□□ 1.84
CCDC40Q4G0X9 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
CCDC40Q4G0X9 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC40Q4G0X9 TPT1-202ENST00000379055 948 ntTSL 2 BASIC26.53■■□□□ 1.84
CCDC40Q4G0X9 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC40Q4G0X9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CCDC40Q4G0X9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.53■■□□□ 1.84
CCDC40Q4G0X9 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC40Q4G0X9 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
CCDC40Q4G0X9 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC40Q4G0X9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC40Q4G0X9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
CCDC40Q4G0X9 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
CCDC40Q4G0X9 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 AC060814.1-201ENST00000554326 538 ntBASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CCDC40Q4G0X9 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.5■■□□□ 1.83
CCDC40Q4G0X9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
CCDC40Q4G0X9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
CCDC40Q4G0X9 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CCDC40Q4G0X9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.5■■□□□ 1.83
CCDC40Q4G0X9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC40Q4G0X9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.49■■□□□ 1.83
CCDC40Q4G0X9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC40Q4G0X9 AL157400.5-201ENST00000507624 621 ntBASIC26.49■■□□□ 1.83
CCDC40Q4G0X9 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC40Q4G0X9 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CCDC40Q4G0X9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.49■■□□□ 1.83
CCDC40Q4G0X9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.48■■□□□ 1.83
CCDC40Q4G0X9 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
CCDC40Q4G0X9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.48■■□□□ 1.83
CCDC40Q4G0X9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.48■■□□□ 1.83
CCDC40Q4G0X9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
CCDC40Q4G0X9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.47■■□□□ 1.83
CCDC40Q4G0X9 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC26.47■■□□□ 1.83
CCDC40Q4G0X9 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
CCDC40Q4G0X9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.47■■□□□ 1.83
CCDC40Q4G0X9 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC40Q4G0X9 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC40Q4G0X9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC40Q4G0X9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC40Q4G0X9 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC40Q4G0X9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC40Q4G0X9 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC40Q4G0X9 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC40Q4G0X9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
CCDC40Q4G0X9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC26.45■■□□□ 1.83
CCDC40Q4G0X9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.45■■□□□ 1.82
CCDC40Q4G0X9 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC40Q4G0X9 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC40Q4G0X9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC40Q4G0X9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC26.44■■□□□ 1.82
CCDC40Q4G0X9 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC40Q4G0X9 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC40Q4G0X9 AC096887.2-201ENST00000623443 1957 ntBASIC26.44■■□□□ 1.82
CCDC40Q4G0X9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.43■■□□□ 1.82
CCDC40Q4G0X9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC26.43■■□□□ 1.82
CCDC40Q4G0X9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC26.42■■□□□ 1.82
CCDC40Q4G0X9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC40Q4G0X9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.42■■□□□ 1.82
CCDC40Q4G0X9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC40Q4G0X9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.42■■□□□ 1.82
CCDC40Q4G0X9 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC40Q4G0X9 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.41■■□□□ 1.82
CCDC40Q4G0X9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC40Q4G0X9 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
CCDC40Q4G0X9 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC40Q4G0X9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC40Q4G0X9 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC40Q4G0X9 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC40Q4G0X9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC40Q4G0X9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC40Q4G0X9 AC022413.1-201ENST00000624602 984 ntBASIC26.4■■□□□ 1.82
CCDC40Q4G0X9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.4■■□□□ 1.82
CCDC40Q4G0X9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
CCDC40Q4G0X9 AC025884.2-201ENST00000553429 711 ntBASIC26.39■■□□□ 1.82
CCDC40Q4G0X9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.39■■□□□ 1.82
CCDC40Q4G0X9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.39■■□□□ 1.81
CCDC40Q4G0X9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.39■■□□□ 1.81
CCDC40Q4G0X9 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
CCDC40Q4G0X9 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.39■■□□□ 1.81
CCDC40Q4G0X9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC26.38■■□□□ 1.81
CCDC40Q4G0X9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC26.38■■□□□ 1.81
CCDC40Q4G0X9 AC092296.2-201ENST00000589470 999 ntBASIC26.38■■□□□ 1.81
CCDC40Q4G0X9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
CCDC40Q4G0X9 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.37■■□□□ 1.81
CCDC40Q4G0X9 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC26.37■■□□□ 1.81
CCDC40Q4G0X9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC40Q4G0X9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CCDC40Q4G0X9 SMPD5-203ENST00000639008 1464 ntBASIC26.36■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms