Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.936e-6■■■□□ 18.1
SFPQP23246 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.86e-6■■■□□ 18.1
SFPQP23246 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC14.07□□□□□ -0.166e-6■■■□□ 18.1
SFPQP23246 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.91■■□□□ 1.263e-6■■■□□ 18
SFPQP23246 EIPR1-204ENST00000435721 672 ntTSL 321.15■□□□□ 0.983e-6■■■□□ 18
SFPQP23246 EIPR1-203ENST00000406835 738 ntTSL 521.15■□□□□ 0.983e-6■■■□□ 18
SFPQP23246 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.853e-6■■■□□ 18
SFPQP23246 EIPR1-205ENST00000441271 647 ntTSL 519.18■□□□□ 0.663e-6■■■□□ 18
SFPQP23246 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.12■□□□□ 0.493e-6■■■□□ 18
SFPQP23246 EIPR1-208ENST00000455162 847 ntTSL 511.48□□□□□ -0.573e-6■■■□□ 18
SFPQP23246 EIPR1-210ENST00000463662 757 ntTSL 39.9□□□□□ -0.823e-6■■■□□ 18
SFPQP23246 CTBP1-214ENST00000514495 564 ntTSL 230.96■■■□□ 2.554e-7■■■□□ 18
SFPQP23246 CTBP1-217ENST00000515399 985 ntTSL 321.86■■□□□ 1.094e-7■■■□□ 18
SFPQP23246 CTBP1-213ENST00000514210 856 ntTSL 216.58■□□□□ 0.244e-7■■■□□ 18
SFPQP23246 CTBP1-212ENST00000513420 704 ntTSL 316.52■□□□□ 0.244e-7■■■□□ 18
SFPQP23246 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.271e-6■■■□□ 18
SFPQP23246 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.02■■□□□ 1.284e-7■■■□□ 18
SFPQP23246 ZNF148-204ENST00000471196 566 ntTSL 421.81■■□□□ 1.084e-7■■■□□ 18
SFPQP23246 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.134e-7■■■□□ 18
SFPQP23246 ZNF148-205ENST00000484491 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.194e-7■■■□□ 18
SFPQP23246 ZNF148-207ENST00000492394 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.634e-7■■■□□ 18
SFPQP23246 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.064e-7■■■□□ 18
SFPQP23246 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.82e-6■■■□□ 18
SFPQP23246 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC16.62■□□□□ 0.252e-6■■■□□ 18
SFPQP23246 NOL4L-204ENST00000375677 541 ntTSL 313.13□□□□□ -0.312e-6■■■□□ 18
SFPQP23246 DIP2C-205ENST00000634311 4961 ntTSL 5 BASIC14.54□□□□□ -0.084e-6■■■□□ 18
SFPQP23246 DIP2C-201ENST00000280886 7888 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.494e-6■■■□□ 18
SFPQP23246 HS6ST1-202ENST00000463963 584 ntTSL 216.33■□□□□ 0.23e-6■■■□□ 18
SFPQP23246 CCNY-209ENST00000493157 816 ntTSL 519.02■□□□□ 0.644e-6■■■□□ 18
SFPQP23246 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.66■□□□□ 0.584e-6■■■□□ 18
SFPQP23246 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.394e-6■■■□□ 18
SFPQP23246 CCNY-207ENST00000490012 793 ntTSL 317.4■□□□□ 0.384e-6■■■□□ 18
SFPQP23246 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.084e-6■■■□□ 18
SFPQP23246 CCNY-204ENST00000374706 3940 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.514e-6■■■□□ 18
SFPQP23246 CCNY-208ENST00000492478 809 ntTSL 59.82□□□□□ -0.844e-6■■■□□ 18
SFPQP23246 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC22.91■■□□□ 1.264e-6■■■□□ 17.9
SFPQP23246 AGAP1-212ENST00000614409 9932 ntTSL 5 BASIC12.96□□□□□ -0.344e-6■■■□□ 17.9
SFPQP23246 AGAP1-207ENST00000428334 10090 ntTSL 5 BASIC11.81□□□□□ -0.524e-6■■■□□ 17.9
SFPQP23246 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.321e-6■■■□□ 17.9
SFPQP23246 RAI1-204ENST00000489697 1570 ntTSL 317.54■□□□□ 0.47e-8■■■□□ 17.9
SFPQP23246 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.83■□□□□ 0.452e-6■■■□□ 17.8
SFPQP23246 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.69e-7■■■□□ 17.8
SFPQP23246 QSER1-203ENST00000527250 448 ntTSL 33.1□□□□□ -1.919e-7■■■□□ 17.8
SFPQP23246 LZTS2-207ENST00000489526 802 ntTSL 221.77■■□□□ 1.085e-7■■■□□ 17.8
SFPQP23246 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.055e-7■■■□□ 17.8
SFPQP23246 LZTS2-204ENST00000429732 701 ntTSL 519.6■□□□□ 0.735e-7■■■□□ 17.8
SFPQP23246 LZTS2-203ENST00000426584 816 ntTSL 318.28■□□□□ 0.525e-7■■■□□ 17.8
SFPQP23246 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.81■■■□□ 2.043e-7■■■□□ 17.8
SFPQP23246 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC26.19■■□□□ 1.783e-7■■■□□ 17.8
SFPQP23246 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.723e-7■■■□□ 17.8
SFPQP23246 DAZAP1-204ENST00000586579 619 ntTSL 325.25■■□□□ 1.633e-7■■■□□ 17.8
SFPQP23246 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC24.77■■□□□ 1.563e-7■■■□□ 17.8
SFPQP23246 DAZAP1-210ENST00000592453 1021 ntTSL 516.5■□□□□ 0.233e-7■■■□□ 17.8
SFPQP23246 TULP4-207ENST00000620026 680 ntTSL 423.66■■□□□ 1.383e-6■■■□□ 17.8
SFPQP23246 TTC28-201ENST00000397906 11795 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.324e-6■■■□□ 17.7
SFPQP23246 PHRF1-206ENST00000534320 5178 ntTSL 519.89■□□□□ 0.784e-6■■■□□ 17.7
SFPQP23246 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.74e-6■■■□□ 17.7
SFPQP23246 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.32■■■□□ 2.614e-7■■■□□ 17.7
SFPQP23246 PICALM-215ENST00000531558 565 ntTSL 528.68■■■□□ 2.184e-7■■■□□ 17.7
SFPQP23246 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC27.53■■■□□ 24e-7■■■□□ 17.7
SFPQP23246 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.934e-7■■■□□ 17.7
SFPQP23246 PICALM-218ENST00000532041 699 ntTSL 325.95■■□□□ 1.744e-7■■■□□ 17.7
SFPQP23246 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.134e-7■■■□□ 17.7
SFPQP23246 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC19.31■□□□□ 0.684e-7■■■□□ 17.7
SFPQP23246 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.634e-7■■■□□ 17.7
SFPQP23246 PICALM-210ENST00000528411 586 ntTSL 516.73■□□□□ 0.274e-7■■■□□ 17.7
SFPQP23246 IL1R1-211ENST00000442590 577 ntTSL 313.74□□□□□ -0.214e-7■■■□□ 17.7
SFPQP23246 IL1R1-209ENST00000428279 1525 ntTSL 513.13□□□□□ -0.314e-7■■■□□ 17.7
SFPQP23246 IL1R1-212ENST00000450319 549 ntTSL 311.9□□□□□ -0.54e-7■■■□□ 17.7
SFPQP23246 IL1R1-203ENST00000409589 3544 ntTSL 5 BASIC11.21□□□□□ -0.624e-7■■■□□ 17.7
SFPQP23246 IL1R1-208ENST00000424272 2658 ntTSL 5 BASIC9.38□□□□□ -0.914e-7■■■□□ 17.7
SFPQP23246 PICALM-201ENST00000356360 1958 ntTSL 5 BASIC8.81□□□□□ -14e-7■■■□□ 17.7
SFPQP23246 PICALM-203ENST00000525162 548 ntTSL 48.54□□□□□ -1.044e-7■■■□□ 17.7
SFPQP23246 IL1R1-213ENST00000452403 609 ntTSL 37.07□□□□□ -1.284e-7■■■□□ 17.7
SFPQP23246 PICALM-223ENST00000534412 811 ntTSL 56.76□□□□□ -1.334e-7■■■□□ 17.7
SFPQP23246 PICALM-217ENST00000531930 703 ntTSL 56.3□□□□□ -1.44e-7■■■□□ 17.7
SFPQP23246 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC6.14□□□□□ -1.434e-7■■■□□ 17.7
SFPQP23246 PICALM-208ENST00000528256 563 ntTSL 45.99□□□□□ -1.454e-7■■■□□ 17.7
SFPQP23246 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.28□□□□□ -1.564e-7■■■□□ 17.7
SFPQP23246 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.72□□□□□ -1.814e-7■■■□□ 17.7
SFPQP23246 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.12■□□□□ 0.333e-6■■■□□ 17.7
SFPQP23246 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.073e-6■■■□□ 17.7
SFPQP23246 PLEKHA7-211ENST00000531066 4561 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.243e-6■■■□□ 17.7
SFPQP23246 PLEKHA7-209ENST00000529213 561 ntTSL 412.93□□□□□ -0.343e-6■■■□□ 17.7
SFPQP23246 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.268e-8■■■□□ 17.7
SFPQP23246 SMAD3-209ENST00000558894 797 ntTSL 56.2□□□□□ -1.421e-6■■■□□ 17.7
SFPQP23246 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC29.27■■■□□ 2.286e-7■■■□□ 17.7
SFPQP23246 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.86e-7■■■□□ 17.7
SFPQP23246 CTBP1-208ENST00000506180 843 ntTSL 520.52■□□□□ 0.886e-7■■■□□ 17.7
SFPQP23246 DLEU1-218ENST00000475913 534 ntTSL 1 (best)14.07□□□□□ -0.163e-6■■■□□ 17.6
SFPQP23246 DLEU1-203ENST00000461527 917 ntTSL 1 (best) BASIC13.94□□□□□ -0.183e-6■■■□□ 17.6
SFPQP23246 DLEU1-229ENST00000486895 481 ntTSL 1 (best) BASIC11.77□□□□□ -0.533e-6■■■□□ 17.6
SFPQP23246 DLEU1-225ENST00000484529 400 ntTSL 1 (best)10.04□□□□□ -0.83e-6■■■□□ 17.6
SFPQP23246 UTRN-206ENST00000421035 572 ntTSL 27.52□□□□□ -1.211e-6■■■□□ 17.6
SFPQP23246 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.662e-6■■■□□ 17.6
SFPQP23246 SDF4-205ENST00000465727 2095 ntTSL 223.01■■□□□ 1.272e-6■■■□□ 17.6
SFPQP23246 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.832e-6■■■□□ 17.6
SFPQP23246 SDF4-203ENST00000403997 728 ntTSL 314.87□□□□□ -0.032e-6■■■□□ 17.6
SFPQP23246 ELL2-207ENST00000515020 340 ntTSL 227.5■■□□□ 1.991e-7■■■□□ 17.6
SFPQP23246 ELL2-206ENST00000513343 582 ntTSL 323.13■■□□□ 1.291e-7■■■□□ 17.6
Retrieved 100 of 4,991 protein–RNA pairs in 59.5 ms